|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | GPI anchor metabolic process, | 0.017672675 | GO:0006505 | | DNA methylation, | 0.017672675 | GO:0006306 | | DNA recombination, | 0.019266632 | GO:0006310 | | Base_excision_repair | 0.02876422 | KEGG | | Ubiquitin_mediated_proteolysis | 0.044072282 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000032G2590 | apurinic endonuclease-redox protein | AT2G41460 (1.70E-56) | | PH01000038G1400 | alpha/beta-Hydrolases superfamily protein | AT4G34310 (0.00E+00) | | PH01000274G0530 | ubiquiting-conjugating enzyme 2 | AT2G02760 (2.50E-82) | | PH01000544G0630 | ubiquitin-specific protease 17 | AT5G65450 (3.00E-121) | | PH01001331G0500 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT3G17310 (2.50E-78) | | PH01002938G0200 | RECQ helicase SIM | AT5G27680 (9.00E-108) | | PH01003376G0110 | Bax inhibitor-1 family protein | AT4G15470 (5.10E-83) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000456 | DNA methylation,
Peroxisome
Fatty_acid_metabolism
| details | | CFinderM000646 | ion transport,
Ubiquitin_mediated_proteolysis
membrane,
| details | | CFinderM000671 | SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
| details | | CFinderM000781 | spliceosomal complex,
GPI anchor metabolic process,
mitosis,
Spliceosome
| details | | CFinderM000904 | IWS1 Transcription_Regulator(from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
GPI anchor metabolic process,
| details | | CFinderM000954 | defense response,
ADP_binding
acid phosphatase activity,
Ubiquitin_mediated_proteolysis
acid-amino acid ligase activity,
| details | | CFinderM001146 | TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
| details | | CFinderM001204 | Mre11 complex,
nucleolus,
DNA repair,
| details | | CFinderM001473 | GPI anchor metabolic process,
DNA recombination,
RNA_degradation
| details | | CFinderM001492 | mitochondrial inner membrane,
mitochondrial inner membrane presequence translocase complex,
nucleolus,
Ubiquitin_mediated_proteolysis
ribosome biogenesis,
| details | | CFinderM001559 | GT22 GlycosylTransferases
intrinsic to endoplasmic reticulum membrane,
GPI anchor metabolic process,
GPI anchor biosynthetic process,
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
| details | | CFinderM001636 | GPI anchor metabolic process,
double-strand break repair,
protein folding,
nucleus,
DNA metabolic process,
exonuclease activity,
endonuclease activity,
phosphoprotein phosphatase activity,
manganese ion binding,
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM001669 | CBM49 Carbohydrate-Binding_Modules
GH9 Glycoside_Hydrolases
phosphatidylinositol_dephosphorylation
| details | | CFinderM001726 | methyltransferase activity,
fucosyltransferase_activity
DNA methylation,
protein methylation,
Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
membrane,
protein glycosylation,
| details | | CFinderM001730 | Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001838 | ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
| details | | CFinderM001855 | Base_excision_repair
GPI anchor metabolic process,
DNA recombination,
| details | | CFinderM001856 | GPI anchor metabolic process,
Base_excision_repair
nuclease activity,
| details | | CFinderM001861 | SNARE_interactions_in_vesicular_transport
acid-amino acid ligase activity,
Ubiquitin_mediated_proteolysis
mRNA_surveillance_pathway
| details | | CFinderM001869 | DNA recombination,
(1->3)-beta-D-glucan biosynthetic process,
1,3-beta-D-glucan synthase complex,
Ubiquitin_mediated_proteolysis
| details | | CFinderM001888 | Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
| details | | CFinderM001890 | clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
| details |
4.Expression profilings |
