|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Valine,_leucine_and_isoleucine_biosynthesis | 0.0046875 | KEGG | | C5-Branched_dibasic_acid_metabolism | 0.00936797 | KEGG | | SBP Transcription_Regulator(from PlantTFDB) | 0.013868038 | GFam | | Pantothenate_and_CoA_biosynthesis | 0.016934939 | KEGG | | Butanoate_metabolism | 0.016934939 | KEGG | | branched chain family amino acid biosynthetic process, | 0.035099163 | GO:0009082 | | acetolactate synthase activity, | 0.040806878 | GO:0003984 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000014G1010 | CTC-interacting domain 7 | AT2G26280 (2.00E-104) | | PH01000306G1200 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | AT5G60980 (4.20E-41) | | PH01000323G0970 | elongator protein 2 | AT1G49540 (0.00E+00) | | PH01000355G0510 | translocon at the outer membrane of chloroplasts 64-V | AT5G09420 (4.70E-74) | | PH01000572G0830 | NB-ARC domain-containing disease resistance protein | AT3G14470 (1.40E-91) | | PH01001316G0020 | squamosa promoter binding protein-like 7 | AT5G18830 (4.00E-133) | | PH01001462G0130 | ACT domain-containing small subunit of acetolactate synthase protein | AT2G31810 (2.00E-132) | | PH01001687G0160 | DegP protease 10 | AT5G36950 (0.00E+00) | | PH01002740G0130 | - | - (-) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000144 | protein binding,
acid-amino acid ligase activity,
| details | | CFinderM000408 | Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
| details | | CFinderM000691 | ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
| details | | CFinderM000717 | tRNA processing,
| details | | CFinderM000995 | nucleus,
riboflavin kinase activity,
RLK-Pelle_LRR-II (from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
Riboflavin_metabolism
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
riboflavin biosynthetic process,
response to hormone stimulus,
| details | | CFinderM000998 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lysine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
histone_methylation
histone_lysine_methylation
aromatic amino acid family biosynthetic process,
SET Transcription_Regulator(from iTAK)
| details | | CFinderM001039 | acetyl-CoA carboxylase activity,
biotin_carboxylase_activity
Fatty_acid_biosynthesis
Propanoate_metabolism
Pyruvate_metabolism
cytokinesis
microtubule cytoskeleton organization,
ligase activity,
microtubule binding,
| details | | CFinderM001057 | RLK-Pelle_URK-1 (from iTAK)
NEK (from iTAK)
chromatin silencing at telomere,
chromatin modification,
histone acetylation,
| details | | CFinderM001131 | | details | | CFinderM001166 | DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
| details | | CFinderM001502 | SET Transcription_Regulator(from iTAK)
ribonucleoprotein complex,
nucleus,
histone_lysine_methylation
RNA processing,
| details | | CFinderM001510 | Ribosome_biogenesis_in_eukaryotes
RNA processing,
acid-amino acid ligase activity,
| details | | CFinderM001516 | Ribosome_biogenesis_in_eukaryotes
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001517 | N-acetyl-gamma-glutamyl-phosphate reductase activity,
cellular amino acid biosynthetic process,
cellular amino acid metabolic process,
| details | | CFinderM001544 | RLK-Pelle_LRR-VI-2 (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
nuclear pore,
RNA_transport
| details | | CFinderM001582 | cellular_homeostasis
Peroxisome
mitochondrial outer membrane,
protein methylation,
| details | | CFinderM001613 | RNA_degradation
| details | | CFinderM001718 | phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
| details | | CFinderM001719 | nuclear pore,
RNA modification,
pseudouridine synthesis,
pseudouridine synthase activity,
Ribosome_biogenesis_in_eukaryotes
RNA_transport
| details | | CFinderM001758 | nuclear pore,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001773 | Group-Pl-3 (from iTAK)
phosphoribosylformylglycinamidine cyclo-ligase activity,
'de novo' IMP biosynthetic process,
intracellular,
| details | | CFinderM001831 | | details | | CFinderM001882 | Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
branched chain family amino acid biosynthetic process,
SBP Transcription_Regulator(from PlantTFDB)
Butanoate_metabolism
Pantothenate_and_CoA_biosynthesis
acetolactate synthase activity,
| details |
4.Expression profilings |
