CFinderM001853's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
peroxisome organization,0.007216945GO:0007031
integral_component_of_peroxisomal_membrane0.007307244GO:0005779
cullin-RING ubiquitin ligase complex,0.007579996GO:0031461
bZIP Transcription_Regulator(from PlantTFDB)0.03012873GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000276G1300RING/U-box superfamily proteinAT4G35840 (4.60E-58)
PH01000302G0960zinc knuckle (CCHC-type) family proteinAT5G49930 (0.00E+00)
PH01000454G1000cullin 1AT4G02570 (0.00E+00)
PH01000540G0130peroxin 3AT1G48635 (3.50E-89)
PH01001169G0070Basic-leucine zipper (bZIP) transcription factor family proteinAT5G11260 (4.40E-27)
PH01001238G0220TOPLESS-related 1AT1G80490 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000185integral to membrane,
details
CFinderM000188ubiquitin-dependent protein catabolic process,
details
CFinderM000220phospholipid metabolic process,
N-methyltransferase activity,
Phosphatidylinositol_signaling_system
phosphoglycolate phosphatase activity,
details
CFinderM000302nucleosome assembly,
nucleosome,
protein_heterodimerization_activity
LBD Transcription_Regulator(from PlantTFDB)
RNA_degradation
nucleic acid binding,
details
CFinderM000503details
CFinderM000535GT37 GlycosylTransferases
CMGC_MAPK (from iTAK)
details
CFinderM000545binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
details
CFinderM000566cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
ubiquitin-dependent protein catabolic process,
peroxisome organization,
integral_component_of_peroxisomal_membrane
PHD Transcription_Regulator(from iTAK)
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM000611WNK_NRBP (from iTAK)
PHD Transcription_Regulator(from iTAK)
details
CFinderM000862DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,
details
CFinderM001087peroxiredoxin activity,
antioxidant activity,
Glutathione_metabolism
metallopeptidase activity,
details
CFinderM001160TLK (from iTAK)
cell_cortex

details
CFinderM001230base-excision repair,
mRNA_surveillance_pathway
DNA repair,
details
CFinderM001484RLK-Pelle_RLCK-VI (from iTAK)
mRNA_surveillance_pathway
details
CFinderM001590protein processing,
peroxiredoxin activity,
antioxidant activity,
integral to membrane,
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_elongation
oxidoreductase activity, acting on the CH-CH group of donors,
double-stranded RNA binding,
ribonuclease III activity,
details
CFinderM001725cellular protein metabolic process,
MYB Transcription_Regulator(from PlantTFDB)
details
CFinderM001821protein processing,
mRNA_surveillance_pathway
protein binding,
details
CFinderM001822protein processing,
PHD Transcription_Regulator(from iTAK)
details
CFinderM001857protein processing,
antioxidant activity,
peroxiredoxin activity,
details
CFinderM001893Golgi-associated vesicle,
Terpenoid_backbone_biosynthesis
membrane coat,
COPI vesicle coat,
isoprenoid biosynthetic process,
details

4.Expression profilings