CFinderM001855's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Base_excision_repair0.008224126KEGG
GPI anchor metabolic process,0.012841542GO:0006505
DNA recombination,0.019244258GO:0006310

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000032G2590apurinic endonuclease-redox proteinAT2G41460 (1.70E-56)
PH01000038G1400alpha/beta-Hydrolases superfamily proteinAT4G34310 (0.00E+00)
PH01001711G0360COP1-interacting protein 8AT5G64920 (4.20E-28)
PH01001852G0460alpha/beta-Hydrolases superfamily proteinAT5G21950 (1.10E-50)
PH01002541G0130FK506 BINDING PROTEIN 53AT4G25340 (1.30E-19)
PH01002938G0200RECQ helicase SIMAT5G27680 (9.00E-108)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000671SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
details
CFinderM000781spliceosomal complex,
GPI anchor metabolic process,
mitosis,
Spliceosome
details
CFinderM000885SNF2 Transcription_Regulator(from iTAK)
valyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
valine-tRNA ligase activity,
protein binding,
aminoacyl-tRNA_editing_activity
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
tRNA aminoacylation for protein translation,
cellulose biosynthetic process,
details
CFinderM000904IWS1 Transcription_Regulator(from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
GPI anchor metabolic process,
details
CFinderM001129nucleus,
double-strand break repair,
DNA metabolic process,
RNA_polymerase
Pyrimidine_metabolism
Purine_metabolism
details
CFinderM001133tRNA_(cytosine-5-)-methyltransferase_activity
RNA modification,
C3H Transcription_Regulator(from PlantTFDB)
details
CFinderM001252SET Transcription_Regulator(from iTAK)
eukaryotic translation initiation factor 3 complex,
RNA_transport
protein binding,
details
CFinderM001473GPI anchor metabolic process,
DNA recombination,
RNA_degradation
details
CFinderM001492mitochondrial inner membrane,
mitochondrial inner membrane presequence translocase complex,
nucleolus,
Ubiquitin_mediated_proteolysis
ribosome biogenesis,
details
CFinderM001559GT22 GlycosylTransferases
intrinsic to endoplasmic reticulum membrane,
GPI anchor metabolic process,
GPI anchor biosynthetic process,
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
details
CFinderM001636GPI anchor metabolic process,
double-strand break repair,
protein folding,
nucleus,
DNA metabolic process,
exonuclease activity,
endonuclease activity,
phosphoprotein phosphatase activity,
manganese ion binding,
peptidyl-prolyl cis-trans isomerase activity,
details
CFinderM001659protein import into nucleus,
nuclear pore,
details
CFinderM001661RNA_transport
RNA metabolic process,
details
CFinderM001779pseudouridine synthesis,
RNA modification,
RNA binding,
binding,
pseudouridine synthase activity,
details
CFinderM001839GPI anchor metabolic process,
DNA methylation,
DNA recombination,
Base_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001856GPI anchor metabolic process,
Base_excision_repair
nuclease activity,
details
CFinderM001869DNA recombination,
(1->3)-beta-D-glucan biosynthetic process,
1,3-beta-D-glucan synthase complex,
Ubiquitin_mediated_proteolysis
details

4.Expression profilings