|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | GH63 Glycoside_Hydrolases | 0.000375053 | GFam | | oligosaccharide metabolic process, | 0.006249902 | GO:0009311 | | mannosyl-oligosaccharide glucosidase activity, | 0.011024827 | GO:0004573 | | oxygen evolving complex, | 0.020256706 | GO:0009654 | | photosystem II, | 0.020256706 | GO:0009523 | | extrinsic to membrane, | 0.020256706 | GO:0019898 | | Photosynthesis | 0.049765366 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000002G1150 | glucosidase 1 | AT1G67490 (0.00E+00) | | PH01000825G0440 | Photosystem II reaction center PsbP family protein | AT2G28605 (6.00E-55) | | PH01001653G0150 | BolA-like family protein | AT5G17560 (1.70E-32) | | PH01001692G0300 | trigalactosyldiacylglycerol 1 | AT1G19800 (9.30E-92) | | PH01001810G0170 | alpha/beta-Hydrolases superfamily protein | AT5G06570 (1.10E-79) | | PH01006233G0050 | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | AT2G32415 (2.00E-160) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000202 | peroxiredoxin activity,
antioxidant activity,
RNA_degradation
GRAS Transcription_Regulator(from PlantTFDB)
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM000355 | OFP Transcription_Regulator(from iTAK)
electron transport chain,
RNA_degradation
Photosynthesis
| details | | CFinderM000357 | RNA_degradation
steroid biosynthetic process,
S-adenosylmethionine-dependent methyltransferase activity,
| details | | CFinderM000509 | Whirly Transcription_Regulator(from PlantTFDB)
protochlorophyllide reductase activity,
Photosynthesis
Porphyrin_and_chlorophyll_metabolism
photosystem II,
oxygen evolving complex,
RNA_degradation
| details | | CFinderM000510 | Porphyrin_and_chlorophyll_metabolism
protochlorophyllide reductase activity,
glutamate-1-semialdehyde 2,1-aminomutase activity,
tetrapyrrole biosynthetic process,
sodium ion transport,
RNA_degradation
| details | | CFinderM000700 | GH63 Glycoside_Hydrolases
RLK-Pelle_RLCK-XIII (from iTAK)
oligosaccharide metabolic process,
ubiquinone biosynthetic process,
tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
mannosyl-oligosaccharide glucosidase activity,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen,
monooxygenase activity,
| details | | CFinderM000775 | Ribosome
iron_ion_transmembrane_transport
translation,
iron ion transmembrane transporter activity,
structural constituent of ribosome,
intracellular,
RNA_degradation
| details | | CFinderM000982 | RNA_degradation
folic acid-containing compound biosynthetic process,
methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity
cullin-RING ubiquitin ligase complex,
| details | | CFinderM000997 | oligosaccharide metabolic process,
GH63 Glycoside_Hydrolases
cell wall,
cell wall modification,
mannosyl-oligosaccharide glucosidase activity,
CE8 Carbohydrate_Esterases
N-Glycan_biosynthesis
| details | | CFinderM001222 | aminoacylase activity,
RNA_degradation
| details | | CFinderM001489 | Steroid_hormone_biosynthesis
Fatty_acid_elongation
Biosynthesis_of_unsaturated_fatty_acids
RNA_degradation
| details | | CFinderM001576 | RNA_degradation
photosystem II,
extrinsic to membrane,
oxygen evolving complex,
| details | | CFinderM001676 | Spliceosome
| details | | CFinderM001691 | Spliceosome
Rab GTPase activator activity,
| details | | CFinderM001813 | GT48 GlycosylTransferases
mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
1,3-beta-D-glucan synthase complex,
S-adenosylmethionine-dependent methyltransferase activity,
cytochrome-c oxidase activity,
steroid biosynthetic process,
(1->3)-beta-D-glucan biosynthetic process,
metabolic process,
RNA_degradation
Oxidative_phosphorylation
cellular metabolic process,
| details | | CFinderM001876 | Spliceosome
| details |
4.Expression profilings |
