|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | HD-ZIP Transcription_Regulator(from PlantTFDB) | 0.020236142 | GFam | | HB-BELL Transcription_Regulator(from iTAK) | 0.020236142 | GFam | | HB-HD-ZIP Transcription_Regulator(from iTAK) | 0.020236142 | GFam | | TALE Transcription_Regulator(from PlantTFDB) | 0.020236142 | GFam | | membrane, | 0.021612693 | GO:0016020 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000017G2520 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | AT5G60690 (0) | | PH01000252G0020 | NB-ARC domain-containing disease resistance protein | AT3G07040 (3.30E-54) | | PH01000953G0720 | MATE efflux family protein | AT1G47530 (2.00E-139) | | PH01002667G0160 | peptide transporter 2 | AT2G02040 (1.00E-134) | | PH01002914G0110 | XB3 ortholog 5 in Arabidopsis thaliana | AT3G23280 (2.10E-78) | | PH01003295G0040 | BEL1-like homeodomain 6 | AT4G34610 (1.30E-93) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000264 | intrinsic to endoplasmic reticulum membrane,
GT22 GlycosylTransferases
HD-ZIP Transcription_Regulator(from PlantTFDB)
HB-HD-ZIP Transcription_Regulator(from iTAK)
oxoglutarate dehydrogenase (succinyl-transferring) activity,
thiamine pyrophosphate binding,
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
Citrate_cycle_(TCA_cycle)
Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
Lysine_degradation
Tryptophan_metabolism
carbon-nitrogen ligase activity, with glutamine as amido-N-donor,
tricarboxylic acid cycle,
GPI anchor biosynthetic process,
| details | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000744 | Arginine_and_proline_metabolism
Phagosome
| details | | CFinderM000954 | defense response,
ADP_binding
acid phosphatase activity,
Ubiquitin_mediated_proteolysis
acid-amino acid ligase activity,
| details | | CFinderM001148 | RLK-Pelle_LRR-VI-1 (from iTAK)
exocyst,
vesicle docking involved in exocytosis,
| details | | CFinderM001300 | regulation of actin filament polymerization,
HD-ZIP Transcription_Regulator(from PlantTFDB)
SBP Transcription_Regulator(from PlantTFDB)
HB-HD-ZIP Transcription_Regulator(from iTAK)
cytoskeleton,
molybdenum ion binding,
| details | | CFinderM001692 | TKL-Pl-4 (from iTAK)
carbohydrate phosphorylation,
Ribosome
translation,
galactose metabolic process,
intracellular,
galactokinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
structural constituent of ribosome,
kinase activity,
| details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001735 | TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
| details | | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
| details | | CFinderM001769 | double-strand break repair,
regulation of actin filament polymerization,
DNA metabolic process,
cytoskeleton,
endonuclease activity,
exonuclease activity,
| details |
4.Expression profilings |
