|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | single-stranded DNA binding, | 0.017513175 | GO:0003697 | | DNA_replication | 0.024310209 | KEGG | | RNA processing, | 0.024310209 | GO:0006396 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000077G0430 | RING/U-box superfamily protein | AT5G01980 (9.10E-60) | | PH01000775G0310 | mitochondrially targeted single-stranded DNA binding protein | AT4G11060 (9.40E-57) | | PH01001082G0140 | - | AT5G19300 (1.80E-94) | | PH01001596G0090 | crooked neck protein, putative / cell cycle protein, putative | AT5G41770 (1.60E-46) | | PH01003119G0190 | DNAJ heat shock N-terminal domain-containing protein | AT2G26890 (1.40E-27) | | PH01003244G0180 | XB3 ortholog 5 in Arabidopsis thaliana | AT3G23280 (3.10E-79) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000285 | ABC_transporters
| details | | CFinderM000538 | GT61 GlycosylTransferases
RLK-Pelle_PERK-1 (from iTAK)
GT47 GlycosylTransferases
Aminoacyl-tRNA_biosynthesis
threonyl-tRNA aminoacylation,
response to oxidative stress,
histidine_catabolic_process_to_glutamate_and_formamide
| details | | CFinderM000717 | tRNA processing,
| details | | CFinderM000959 | RLK-Pelle_PERK-1 (from iTAK)
| details | | CFinderM001044 | | details | | CFinderM001156 | single-stranded DNA binding,
DNA_replication
| details | | CFinderM001198 | RLK-Pelle_RLCK-VI (from iTAK)
Oxidative_phosphorylation
| details | | CFinderM001300 | regulation of actin filament polymerization,
HD-ZIP Transcription_Regulator(from PlantTFDB)
SBP Transcription_Regulator(from PlantTFDB)
HB-HD-ZIP Transcription_Regulator(from iTAK)
cytoskeleton,
molybdenum ion binding,
| details | | CFinderM001330 | selenium binding,
dephosphorylation,
protein tyrosine/serine/threonine phosphatase activity,
protein tyrosine phosphatase activity,
Endocytosis
mRNA_surveillance_pathway
phosphatase activity,
protein dephosphorylation,
cell redox homeostasis,
| details | | CFinderM001409 | Whirly Transcription_Regulator(from PlantTFDB)
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
phosphatidylinositol N-acetylglucosaminyltransferase activity,
GPI anchor biosynthetic process,
| details | | CFinderM001464 | MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RNA processing,
| details | | CFinderM001529 | Fanconi_anaemia_nuclear_complex
DNA repair,
Ubiquitin_mediated_proteolysis
| details | | CFinderM001655 | transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
| details | | CFinderM001682 | RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
sterol_24-C-methyltransferase_activity
steroid biosynthetic process,
single-stranded DNA binding,
| details | | CFinderM001683 | Steroid_biosynthesis
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
sterol_24-C-methyltransferase_activity
protein serine/threonine kinase activity,
protein phosphorylation,
steroid biosynthetic process,
single-stranded DNA binding,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
TKL-Pl-4 (from iTAK)
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001698 | Steroid_biosynthesis
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
single-stranded DNA binding,
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
WRKY Transcription_Regulator(from PlantTFDB)
dephosphorylation,
steroid biosynthetic process,
| details | | CFinderM001699 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
sterol_24-C-methyltransferase_activity
5S rRNA binding,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
Steroid_biosynthesis
steroid biosynthetic process,
branched chain family amino acid metabolic process,
ion transport,
| details | | CFinderM001753 | Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
| details | | CFinderM001852 | calcium-dependent phospholipid binding,
single-stranded DNA binding,
DNA_replication
| details | | CFinderM001878 | isoprenoid biosynthetic process,
mRNA_surveillance_pathway
C2H2 Transcription_Regulator(from PlantTFDB)
fatty-acyl-CoA binding,
| details | | CFinderM001886 | Steroid_biosynthesis
ubiquitin ligase complex,
sterol_24-C-methyltransferase_activity
dephosphorylation,
steroid biosynthetic process,
mRNA_surveillance_pathway
protein ubiquitination,
protein dephosphorylation,
| details | | CFinderM001897 | phosphatase activity,
mRNA_surveillance_pathway
dephosphorylation,
protein dephosphorylation,
protein ubiquitination,
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
ubiquitin ligase complex,
| details |
4.Expression profilings |
