|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | microtubule organizing center, | 0.005153752 | GO:0005815 | | spindle pole, | 0.005153752 | GO:0000922 | | nuclear pore, | 0.012343902 | GO:0005643 | | microtubule cytoskeleton organization, | 0.014599651 | GO:0000226 | | C2H2 Transcription_Regulator(from PlantTFDB) | 0.02846825 | GFam | | RNA_transport | 0.029453253 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000123G1430 | cullin-associated and neddylation dissociated | AT2G02560 (0.00E+00) | | PH01000188G0820 | SUPPRESSOR OF AUXIN RESISTANCE 3 | AT1G80680 (0.00E+00) | | PH01001154G0070 | Spc97 / Spc98 family of spindle pole body (SBP) component | AT1G80260 (0.00E+00) | | PH01001330G0530 | XH/XS domain-containing protein | AT1G15910 (6.00E-141) | | PH01002494G0070 | RING/U-box superfamily protein | AT3G02340 (6.40E-26) | | PH01003903G0070 | C2H2 and C2HC zinc fingers superfamily protein | AT1G34370 (8.50E-35) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000461 | STE_STE11 (from iTAK)
zinc_ion_transmembrane_transport
cellular component organization,
actin cytoskeleton organization,
| details | | CFinderM001342 | | details | | CFinderM001377 | C2H2 Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001495 | integral to Golgi membrane,
intra-Golgi vesicle-mediated transport,
cysteine metabolic process,
STE_STE11 (from iTAK)
Sulfur_relay_system
Thiamine_metabolism
cysteine desulfurase activity,
| details | | CFinderM001540 | DNA polymerase III complex,
alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
Terpenoid_backbone_biosynthesis
3-hydroxyacyl-CoA_dehydrogenase_activity
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
peptide-methionine-(S)-S-oxide reductase activity,
fatty acid metabolic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
| details | | CFinderM001641 | bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001663 | DNA polymerase III complex,
GRAS Transcription_Regulator(from PlantTFDB)
DNA_replication
DNA-directed DNA polymerase activity,
| details | | CFinderM001715 | vacuolar proton-transporting V-type ATPase, V1 domain,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
STE_STE11 (from iTAK)
ATP hydrolysis coupled proton transport,
| details | | CFinderM001743 | | details | | CFinderM001787 | protein-L-isoaspartate (D-aspartate) O-methyltransferase activity,
cellular protein modification process,
binding,
| details | | CFinderM001824 | rRNA modification,
rRNA methyltransferase activity,
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
tRNA aminoacylation,
ligase activity, forming aminoacyl-tRNA and related compounds,
tRNA aminoacylation for protein translation,
| details | | CFinderM001846 | rRNA modification,
rRNA methyltransferase activity,
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
tRNA aminoacylation,
ligase activity, forming aminoacyl-tRNA and related compounds,
tRNA aminoacylation for protein translation,
| details | | CFinderM001847 | peptide-methionine_(R)-S-oxide_reductase_activity
binding,
metallopeptidase activity,
| details | | CFinderM001881 | cysteine metabolic process,
Sulfur_relay_system
Thiamine_metabolism
cysteine desulfurase activity,
microtubule associated complex,
microtubule-based movement,
| details | | CFinderM001892 | phenylalanyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
WRKY Transcription_Regulator(from PlantTFDB)
tRNA binding,
| details |
4.Expression profilings |
