|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Golgi-associated vesicle, | 0.004124935 | GO:0005798 | | Terpenoid_backbone_biosynthesis | 0.009713348 | KEGG | | membrane coat, | 0.011659951 | GO:0030117 | | COPI vesicle coat, | 0.011659951 | GO:0030126 | | isoprenoid biosynthetic process, | 0.043183407 | GO:0008299 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000276G1300 | RING/U-box superfamily protein | AT4G35840 (4.60E-58) | | PH01000287G0350 | - | AT2G17695 (6.70E-58) | | PH01000992G0340 | sacI homology domain-containing protein / WW domain-containing protein | AT3G59770 (6.10E-98) | | PH01001166G0460 | transducin family protein / WD-40 repeat family protein | AT2G46560 (0.00E+00) | | PH01002613G0290 | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | AT4G34450 (0.00E+00) | | PH01003543G0110 | geranylgeranyl reductase | AT4G38460 (4.10E-78) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000188 | ubiquitin-dependent protein catabolic process,
| details | | CFinderM000611 | WNK_NRBP (from iTAK)
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM000862 | DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,
| details | | CFinderM000878 | Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
Phagosome
| details | | CFinderM001087 | peroxiredoxin activity,
antioxidant activity,
Glutathione_metabolism
metallopeptidase activity,
| details | | CFinderM001091 | DBP Transcription_Regulator(from iTAK)
protein dephosphorylation,
nucleosome assembly,
| details | | CFinderM001335 | clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
WRKY Transcription_Regulator(from PlantTFDB)
Phagosome
| details | | CFinderM001336 | Golgi-associated vesicle,
membrane coat,
COPI vesicle coat,
Homologous_recombination
Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
binding,
| details | | CFinderM001342 | | details | | CFinderM001343 | Golgi-associated vesicle,
binding,
Terpenoid_backbone_biosynthesis
guanyl-nucleotide exchange factor activity,
COPI vesicle coat,
membrane coat,
| details | | CFinderM001377 | C2H2 Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001489 | Steroid_hormone_biosynthesis
Fatty_acid_elongation
Biosynthesis_of_unsaturated_fatty_acids
RNA_degradation
| details | | CFinderM001512 | leucyl-tRNA aminoacylation,
GT8 GlycosylTransferases
leucine-tRNA ligase activity,
aminoacyl-tRNA_editing_activity
tRNA aminoacylation for protein translation,
Starch_and_sucrose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
Aminoacyl-tRNA_biosynthesis
| details | | CFinderM001541 | Terpenoid_backbone_biosynthesis
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
1,3-beta-D-glucan synthase complex,
(1->3)-beta-D-glucan biosynthetic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
| details | | CFinderM001590 | protein processing,
peroxiredoxin activity,
antioxidant activity,
integral to membrane,
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_elongation
oxidoreductase activity, acting on the CH-CH group of donors,
double-stranded RNA binding,
ribonuclease III activity,
| details | | CFinderM001664 | MYB_related Transcription_Regulator(from PlantTFDB)
GRAS Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001691 | Spliceosome
Rab GTPase activator activity,
| details | | CFinderM001710 | membrane,
CBM22 Carbohydrate-Binding_Modules
GH10 Glycoside_Hydrolases
hydrolase activity, acting on glycosyl bonds,
hydrogen-translocating pyrophosphatase activity,
transporter activity,
inorganic diphosphatase activity,
proton transport,
transport,
isoprenoid biosynthetic process,
Terpenoid_backbone_biosynthesis
Oxidative_phosphorylation
| details | | CFinderM001725 | cellular protein metabolic process,
MYB Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001821 | protein processing,
mRNA_surveillance_pathway
protein binding,
| details | | CFinderM001822 | protein processing,
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM001829 | retrograde transport, endosome to Golgi,
proton transport,
hydrogen-translocating pyrophosphatase activity,
inorganic diphosphatase activity,
Ether_lipid_metabolism
WRKY Transcription_Regulator(from PlantTFDB)
Glycerophospholipid_metabolism
Oxidative_phosphorylation
| details | | CFinderM001853 | peroxisome organization,
integral_component_of_peroxisomal_membrane
cullin-RING ubiquitin ligase complex,
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001857 | protein processing,
antioxidant activity,
peroxiredoxin activity,
| details | | CFinderM001892 | phenylalanyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
WRKY Transcription_Regulator(from PlantTFDB)
tRNA binding,
| details |
4.Expression profilings |
