CRO_T005423's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T005423 | translation initiation factor 3 subunit H1 |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G05780 | 8.00E-06 | AE3|ASYMMETRIC LEAVES ENHANCER 3;RPN8A|RP non-ATPase subunit 8A |
| Arabidopsis thaliana | AT1G10840 | 5.00E-05 | TIF3H1|translation initiation factor 3 subunit H1 |
| Arabidopsis thaliana | AT3G11270 | 5.00E-05 | MEE34|maternal effect embryo arrest 34 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM001489 | Ubiquitin_Proteasome_system, DUB: JAMM ELL-EAF complex signal recognition particle binding 7S RNA binding endoplasmic reticulum signal peptide binding signal recognition particle, endoplasmic reticulum targeting transition metal ion binding amino acid binding translation elongation factor activity eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex Protein export SRP-dependent cotranslational protein targeting to membrane formation of translation preinitiation complex translational elongation cellular transition metal ion homeostasis metal ion transport translation initiation factor activity RNA transport | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T005423 | scaffolds.min_1000bp | scaffold_3000425 | 3641 | 4608 | + |
Gene detail image
| Genome: |
| CRO_T005423 |
| CDS: |
| CRO_T005423 |
| Transcript: |
| CRO_T005423 |
| Protein: |
| CRO_T005423 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0001731 | formation of translation preinitiation complex | biological_process |
| GO:0003743 | translation initiation factor activity | molecular_function |
| GO:0005829 | cytosol | cellular_component |
| GO:0005852 | eukaryotic translation initiation factor 3 complex | cellular_component |
| GO:0016282 | eukaryotic 43S preinitiation complex | cellular_component |
| GO:0033290 | eukaryotic 48S preinitiation complex | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | JAMM |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K03247 | EIF3H | - | RNA transport | ko03013 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01398.18 | JAB | 23 | 104 | 4.4e-11 |
Expression pattern
 | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 73.1598 | |
| SRR122236 | mixed tissue RA CK | 56.81535 | |
| SRR122237 | mixed tissue RB CK | 52.003 | |
| SRR122250 | callus YE 0.3mg/ml CK | 650.032 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 713.29 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 652.288 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 764.644 | |
| SRR122242 | callus MeJA 100um 0h | 700.204 | |
| SRR122246 | callus MeJA 100um 6h | 453.411 | |
| SRR122240 | callus MeJA 100um 12h | 467.235 | |
| SRR122241 | callus MeJA 100um 24h | 738.9 | |
| SRR122239 | flower CK 1 | 186.862 | |
| SRR1271859 | flower CK 2 | 159.959 | |
| SRR1144633 | healthy flowers CK | 153.7735 | |
| SRR1144634 | flowers PnWB infected | 131.6095 | |
| SRR122257 | hairy root CK | 197.16 | |
| SRR122258 | hairy root MeJA 250um CK | 216.399 | |
| SRR122259 | hairy root MeJA 250um 24h | 234.289 | |
| SRR122256 | hairy root RebH F CK | 201.984 | |
| SRR122255 | hairy root TDCi CK | 208.592 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 245.66 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 238.483 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 227.355 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 211.218 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 181.918 | |
| SRR1820238 | Hairy roots CK GUS 3 | 214.666 | |
| SRR1820233 | Hairy roots CK GUS 4 | 224.59 | |
| SRR1820326 | Hairy roots CK GUS 5 | 218.4805 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 156.511 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 99.8409 | |
| SRR122252 | immature leaf CK | 195.896 | |
| SRR342023 | leaf CK 1 | 323.0975 | |
| SRR342022 | leaf CK 2 | 209.7935 | |
| SRR342019 | leaf CK 3 | 163.2375 | |
| SRR342017 | leaf CK 4 | 177.911 | |
| SRR1271857 | leaf CK 5 | 118.6855 | |
| SRR122251 | mature leaf CK | 174.97 | |
| SRR648705 | root CK 1 | 204.03 | |
| SRR1271858 | root CK 2 | 111.021 | |
| SRR122254 | root CK 3 | 161.181 | |
| SRR648707 | root MeJA 24h | 200.6055 | |
| SRR648709 | root MeJA 24h DSN normalized | 210.2785 | |
| SRR837772 | seedling CK | 117.825 | |
| SRR122243 | sterile seedlings AE CK 1 | 256.644 | |
| SRR122245 | sterile seedlings AE CK 2 | 227.397 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 240.19 | |
| SRR122253 | stem CK | 175.111 | |
| SRR646572 | shoots CK | 209.0665 | |
| SRR647068 | shoots MeJA 6h 1 | 218.245 | |
| SRR646596 | shoots MeJA 6h 2 | 227.713 | |
| SRR646604 | shoots MeJA 24h | 167.2595 | |
| SRR924147 | suspension cells EX ORCA2 CK | 184.8235 | |
| SRR924148 | suspension cells EX ORCA3 CK | 262.7625 |