CRO_T005890's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T005890 | Pentatricopeptide repeat (PPR) superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G02750 | 5.00E-171 | Pentatricopeptide repeat (PPR) superfamily protein |
| Arabidopsis thaliana | AT3G47840 | 2.00E-71 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Arabidopsis thaliana | AT1G71490 | 4.00E-66 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000935 | tRNA wobble position uridine thiolation protein urmylation enzyme active site formation via cysteine modification to L-cysteine persulfide mitochondrial translational termination protein adenylylation thiosulfate sulfurtransferase activity protein adenylyltransferase activity URM1 activating enzyme activity GTPase activity extrinsic component of plastid membrane Sulfur relay system molybdenum cofactor biosynthesis Mo-molybdopterin cofactor biosynthetic process chloroplast fission ribosomal large subunit binding protein self-association chloroplast outer membrane Ubiquitin_Proteasome_system, E1: ThiF chaperone binding RNA binding Ubiquitin_Proteasome_system, DUB: OTU ribosome biogenesis RNA secondary structure unwinding Ribosome biogenesis in eukaryotes ATP-dependent RNA helicase activity | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T005890 | scaffolds.min_1000bp | scaffold_2989192 | 67578 | 69431 | + |
Gene detail image
| Genome: |
| CRO_T005890 |
| CDS: |
| CRO_T005890 |
| Transcript: |
| CRO_T005890 |
| Protein: |
| CRO_T005890 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.3 | PPR_2 | 97 | 144 | 31.0 |
| PF01535.17 | PPR | 198 | 226 | 0.02 |
| PF01535.17 | PPR | 272 | 295 | 0.16 |
| PF13041.3 | PPR_2 | 299 | 346 | 48.7 |
| PF01535.17 | PPR | 409 | 430 | 0.64 |
| PF13041.3 | PPR_2 | 440 | 483 | 40.4 |
| PF01535.17 | PPR | 513 | 536 | 0.23 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 0.228687 | |
| SRR122236 | mixed tissue RA CK | 0.808909 | |
| SRR122237 | mixed tissue RB CK | 0.7265085 | |
| SRR122250 | callus YE 0.3mg/ml CK | 3.45512 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 1.29232 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 2.92896 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 2.40775 | |
| SRR122242 | callus MeJA 100um 0h | 3.20587 | |
| SRR122246 | callus MeJA 100um 6h | 3.05264 | |
| SRR122240 | callus MeJA 100um 12h | 2.16716 | |
| SRR122241 | callus MeJA 100um 24h | 1.69398 | |
| SRR122239 | flower CK 1 | 1.37459 | |
| SRR1271859 | flower CK 2 | 1.51948 | |
| SRR1144633 | healthy flowers CK | 2.318055 | |
| SRR1144634 | flowers PnWB infected | 1.71019 | |
| SRR122257 | hairy root CK | 2.19556 | |
| SRR122258 | hairy root MeJA 250um CK | 0.881803 | |
| SRR122259 | hairy root MeJA 250um 24h | 0.814968 | |
| SRR122256 | hairy root RebH F CK | 1.13244 | |
| SRR122255 | hairy root TDCi CK | 0.886871 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 0.683911 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 0.975331 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 2.52404 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 2.87439 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 2.35396 | |
| SRR1820238 | Hairy roots CK GUS 3 | 2.41923 | |
| SRR1820233 | Hairy roots CK GUS 4 | 1.86582 | |
| SRR1820326 | Hairy roots CK GUS 5 | 3.72212 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 1.47437 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 0.760625 | |
| SRR122252 | immature leaf CK | 1.27551 | |
| SRR342023 | leaf CK 1 | 1.71139 | |
| SRR342022 | leaf CK 2 | 2.118065 | |
| SRR342019 | leaf CK 3 | 1.622415 | |
| SRR342017 | leaf CK 4 | 1.335835 | |
| SRR1271857 | leaf CK 5 | 5.1405 | |
| SRR122251 | mature leaf CK | 2.29814 | |
| SRR648705 | root CK 1 | 2.75057 | |
| SRR1271858 | root CK 2 | 1.160145 | |
| SRR122254 | root CK 3 | 1.37737 | |
| SRR648707 | root MeJA 24h | 3.465455 | |
| SRR648709 | root MeJA 24h DSN normalized | 2.932305 | |
| SRR837772 | seedling CK | 0.1793385 | |
| SRR122243 | sterile seedlings AE CK 1 | 1.31784 | |
| SRR122245 | sterile seedlings AE CK 2 | 1.37991 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 1.36113 | |
| SRR122253 | stem CK | 1.37757 | |
| SRR646572 | shoots CK | 2.837915 | |
| SRR647068 | shoots MeJA 6h 1 | 3.498325 | |
| SRR646596 | shoots MeJA 6h 2 | 3.491005 | |
| SRR646604 | shoots MeJA 24h | 0.639599 | |
| SRR924147 | suspension cells EX ORCA2 CK | 3.89041 | |
| SRR924148 | suspension cells EX ORCA3 CK | 4.2384 |