CRO_T007161's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T007161 | DNA topoisomerase, type IA, core |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G32000 | 2.00E-43 | DNA topoisomerase, type IA, core |
| Arabidopsis thaliana | AT5G63920 | 2.00E-27 | TOP3A|topoisomerase 3alpha |
| Arabidopsis thaliana | AT5G63920 | 2.00E-27 | TOP3A|topoisomerase 3alpha |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000886 | DNA topoisomerase activity Homologous recombination binding cytosol | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T007161 | scaffolds.min_1000bp | scaffold_3010114 | 574 | 4269 | - |
Gene detail image
| Genome: |
| CRO_T007161 |
| CDS: |
| CRO_T007161 |
| Transcript: |
| CRO_T007161 |
| Protein: |
| CRO_T007161 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003916 | DNA topoisomerase activity | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K03165 | TOP3 | EC:5.99.1.2 | Homologous recombination | ko03440 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 2.552675 | |
| SRR122236 | mixed tissue RA CK | 2.38448 | |
| SRR122237 | mixed tissue RB CK | 2.160365 | |
| SRR122250 | callus YE 0.3mg/ml CK | 32.652 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 31.7559 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 31.3621 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 29.0571 | |
| SRR122242 | callus MeJA 100um 0h | 26.0438 | |
| SRR122246 | callus MeJA 100um 6h | 23.1954 | |
| SRR122240 | callus MeJA 100um 12h | 25.3115 | |
| SRR122241 | callus MeJA 100um 24h | 25.1323 | |
| SRR122239 | flower CK 1 | 9.77142 | |
| SRR1271859 | flower CK 2 | 3.12048 | |
| SRR1144633 | healthy flowers CK | 5.301715 | |
| SRR1144634 | flowers PnWB infected | 4.973625 | |
| SRR122257 | hairy root CK | 14.5582 | |
| SRR122258 | hairy root MeJA 250um CK | 7.28885 | |
| SRR122259 | hairy root MeJA 250um 24h | 6.38034 | |
| SRR122256 | hairy root RebH F CK | 8.63846 | |
| SRR122255 | hairy root TDCi CK | 9.64471 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 9.85054 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 9.45666 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 17.5543 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 17.3678 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 15.2116 | |
| SRR1820238 | Hairy roots CK GUS 3 | 16.1452 | |
| SRR1820233 | Hairy roots CK GUS 4 | 16.7733 | |
| SRR1820326 | Hairy roots CK GUS 5 | 14.21395 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 5.65537 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 4.90565 | |
| SRR122252 | immature leaf CK | 11.5043 | |
| SRR342023 | leaf CK 1 | 9.259725 | |
| SRR342022 | leaf CK 2 | 7.243055 | |
| SRR342019 | leaf CK 3 | 8.0006 | |
| SRR342017 | leaf CK 4 | 6.721435 | |
| SRR1271857 | leaf CK 5 | 3.97549 | |
| SRR122251 | mature leaf CK | 10.8841 | |
| SRR648705 | root CK 1 | 2.816045 | |
| SRR1271858 | root CK 2 | 3.715365 | |
| SRR122254 | root CK 3 | 11.9999 | |
| SRR648707 | root MeJA 24h | 2.46301 | |
| SRR648709 | root MeJA 24h DSN normalized | 2.379535 | |
| SRR837772 | seedling CK | 2.64396 | |
| SRR122243 | sterile seedlings AE CK 1 | 11.9527 | |
| SRR122245 | sterile seedlings AE CK 2 | 13.6873 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 11.1636 | |
| SRR122253 | stem CK | 12.07 | |
| SRR646572 | shoots CK | 7.29125 | |
| SRR647068 | shoots MeJA 6h 1 | 7.24118 | |
| SRR646596 | shoots MeJA 6h 2 | 7.90538 | |
| SRR646604 | shoots MeJA 24h | 4.1627 | |
| SRR924147 | suspension cells EX ORCA2 CK | 4.74649 | |
| SRR924148 | suspension cells EX ORCA3 CK | 4.825 |