Gene detail

CRO_T008289's detailed information

Annotation (DRYAD)

Gene ID	Functional Annotation
CRO_T008289	Protein kinase superfamily protein

Blast top3 hits

Species	Gene ID	E-value	Annotation
Arabidopsis thaliana	AT5G18610	3.00E-152	Protein kinase superfamily protein
Arabidopsis thaliana	AT5G13160	1.00E-109	PBS1\|avrPphB susceptible 1
Arabidopsis thaliana	AT5G02800	2.00E-100	CDL1\|CDG1-like 1

Network

Network Category	Global Network	Tissue Preferential Network	Treat Response Network
Coexpression Positive	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
Coexpression Negative	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
PPI Relationship	Null
miRNA-Target Relationship	Null

Functional module

Module ID	Function Annotation	Category
CFinderADM001008	nucleobase-containing compound biosynthetic process barrier septum site selection regulation of ruffle assembly pyrimidine deoxyribonucleosides salvage innate immune response ruffle membrane calcium-dependent ATPase activity transport of virus in host, cell to cell chloroplast fission positive regulation of RNA polymerase II transcriptional preinitiation complex assembly phosphate-containing compound metabolic process cytosolic proteasome complex nuclear proteasome complex nucleotide phosphorylation proteasome regulatory particle, base subcomplex myosin complex adenylate kinase activity ATP binding proteasome-activating ATPase activity ER-associated ubiquitin-dependent protein catabolic process adenosine ribonucleotides de novo biosynthesis TBP-class protein binding motor activity Pyrimidine metabolism phosphatidylinositol binding formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII non-membrane spanning protein tyrosine kinase activity peptidyl-tyrosine phosphorylation nucleotide binding Transcription_related, Transcription factor: M-type actin binding DNA binding protein homodimerization activity response to oxidative stress methyltransferase activity Purine metabolism	global network

Location

Gene	Assembly	Scaffold	Start	End	Strand
CRO_T008289	scaffolds.min_1000bp	scaffold_3055355	421	2959	-

Gene detail image

more details in UCSC

Sequences

Genome:
CRO_T008289
ATGGCTCACCGCAAAGGTGAACACATTAAAGTGCATTATTCTATCACACAAAATGATGAATGTAACTGCAATATGCGTTCTATTCCGGCGGGATTATTGTTGTTCTTTTACATACTTAGTATGGTGGATAATCTGTAGGTATCATGCTGATTAATGCTGATCTCAAGCACTTCTTGACTGATCAATGAATTATTGTCCTCCCTAGTTGCTTAAGCTTTTTCAAGGGTAACTCCCGGTTAGTTGGGCGTTAGGTTGTGGTCCATCCTCAAGCAACCGGGTAATTCCAGTCTACTTTTGCTTGAACAGAATTTCCTGGTCTTTTCAGTATATGGTTTGCTTGAGGGTTCTAGGAATTGAACTGCTCATATGTGAAGGAAACAATTATTCATTTCAAAAAGCTTCTCATGTATTTCAAGTCACATGTGACTGTCATGTGGCAGATAGTTTGGTAAACTTGCATTAGCATCCTTAATTACTTCTAGAAATGCCAATAAGTTCTACAGCAACCCTAACTTGAATTCAAATGGTTTGTATCGGATTCTCTTGTTATGTTTATGGTTTCTTAGCAGGCAAAAAATTACCTGGCTTCAGTTTCTTTGGCCACAATTAATGGGGGGAAAATGGGTATAAATTAAATGCTCTTGCAATGGTTTAATCGTGCACAAATAGTTTGGTGTACTGAGGCATTGGTAGGATATCAGTCAGAGCAATAGCATGGTAACCGAAACTAGAAAGTATAAGCAGTGGAAATAAGGATAGGAGATGCAAACAGCATTATGCTTGTGGAAGCTCATGCTTTACCACTATTAATTTCTTTCTTAGATGGTTATGCTCTGGGGTTAACGGTGATTCTTCTTTCGAGTTGTCGATTAGCATAGTTGCAAAATAATGTCAGAGTGGATTGTTTTTCGTAGTGTATGAAATTGATAAACTAAGCTGTTCATGTTAATTTCATTAAGAAAATGCAATCAAATTTGGCATGTTTGTAAAGACGGCTGACATTTAATGAGTTGATATTAGCTGAGGACTTATGATGGCTTGTAGTTGCTGGGAAGTTAAAAGCGATAAATATCCTTGTGGAATGACAGTAGGAACTTCTCAACCTATGGAAATACTTTAGAAGTTGCTAAGCAATTATTTTGGCTTACCTGGTAGCATATCATTGCTAGTTCCCCTAGAGCTGTCTTTCTCTCGCAACGAATATAAAGTTTCGTTTGACTAGGATGATGAATTTGAAGAAAGTAAGAAAGTAACTCATGAGACTAAAATAAATAAACTATAGCTAAAATAGTCGAACCGCTGCATCACACATAGCATTTGATGCAAAGACTTAGGGCTAACATTGGCACTCCTATGCAGATCTTGCTCCCGACAAAGAACCTTTAGACTGGAATACAAGAATGAAGATTGCAGCTGGTGCAGCTAAAGGATTGGAATATTTGCATGACAAAGCTAATCCACCAGTCATATATAGAGACTTAAAGTCATCCAACATCCTTCTTGACGAAGGCTTTCATCCCAAGTTATCAGATTTCGGGCTTGCAAAGCTTGGTCCTGTTGGGGATAAGACTCATGTATCAACAAGGGTGATGGGAACATATGGTTATTGTGCTCCGGAATATGCCATGACTGGCCAACTTACCTTAAAATCTGATGTATATAGTTTTGGAGTTGTCTTCCTTGAACTCATCACAGGGCGGAAGGCCATTGATAATACAAGGGGCCCAGGAGAGCATAATCTTGTTGCATGGGTACGTAATCTTTTCTTTGCTTTTTCACTGAATTTTTAGCGTTATTGTGTTTTTGCAAATTCCTCGATAGATATGTAGTTTAGTGGTTGATCTTTTGGCTGCGATATAGATAGAAACAGGACTTCTTTGTTTTCTTTTTATCCTATGGAAATGTTTTGCAGGCACGACCACTTTTCAAGGACCGGAGGAAATTTCCAAAGATGGCTGATCCACTATTGCAAGGTCGTTATCCAATGCGAGGACTTTACCAAGCGCTGGCAGTGGCAGCTATGTGCTTGCAAGAACAAGCAGCTACAAGACCTCTAATCGGGGATGTGGTGACTGCACTGACCTATCTAGCCTCCCAAACATATGATCCCAATGCAGCTGCTGCACAGAATAACAGGGTCGGCCCATCTACCCCAAGGAGCAAGGAAGACCGAAGGAGCATGGCAGATGGGGTGGATAGTCCAGATGAACATGGGCATGGTTTTCACGGTTCCCCTTCAACCCACAAAAAGTCTCCTGATTTCAGGAAAAGGGACTCTCCCAGGGAGTTCAATCCCGGTTCAGACTTGAGAAGAATTGAAACAGGCGGTGGTTCTGGAAGGAAATGGGGTCTGGATGAATTAGACCGTGCTGAATCTCAAAAGGACAGCCCTGTGAGCGCAGGTAGAACCAGAGAAACACCAAGGAATCGTGATTTAGACAGAGAACGCGCAGTTGCAGAAGCAAAAGTATGGGGTGAAAACTGGAGAGAGAGAAAGAAAGCGAATGCTGCTGGTAGTTTTGATGGCACGAATGATTGA
CDS:
CRO_T008289
ATGGCTCACCGCAAAGATCTTGCTCCCGACAAAGAACCTTTAGACTGGAATACAAGAATGAAGATTGCAGCTGGTGCAGCTAAAGGATTGGAATATTTGCATGACAAAGCTAATCCACCAGTCATATATAGAGACTTAAAGTCATCCAACATCCTTCTTGACGAAGGCTTTCATCCCAAGTTATCAGATTTCGGGCTTGCAAAGCTTGGTCCTGTTGGGGATAAGACTCATGTATCAACAAGGGTGATGGGAACATATGGTTATTGTGCTCCGGAATATGCCATGACTGGCCAACTTACCTTAAAATCTGATGTATATAGTTTTGGAGTTGTCTTCCTTGAACTCATCACAGGGCGGAAGGCCATTGATAATACAAGGGGCCCAGGAGAGCATAATCTTGTTGCATGGGCACGACCACTTTTCAAGGACCGGAGGAAATTTCCAAAGATGGCTGATCCACTATTGCAAGGTCGTTATCCAATGCGAGGACTTTACCAAGCGCTGGCAGTGGCAGCTATGTGCTTGCAAGAACAAGCAGCTACAAGACCTCTAATCGGGGATGTGGTGACTGCACTGACCTATCTAGCCTCCCAAACATATGATCCCAATGCAGCTGCTGCACAGAATAACAGGGTCGGCCCATCTACCCCAAGGAGCAAGGAAGACCGAAGGAGCATGGCAGATGGGGTGGATAGTCCAGATGAACATGGGCATGGTTTTCACGGTTCCCCTTCAACCCACAAAAAGTCTCCTGATTTCAGGAAAAGGGACTCTCCCAGGGAGTTCAATCCCGGTTCAGACTTGAGAAGAATTGAAACAGGCGGTGGTTCTGGAAGGAAATGGGGTCTGGATGAATTAGACCGTGCTGAATCTCAAAAGGACAGCCCTGTGAGCGCAGGTAGAACCAGAGAAACACCAAGGAATCGTGATTTAGACAGAGAACGCGCAGTTGCAGAAGCAAAAGTATGGGGTGAAAACTGGAGAGAGAGAAAGAAAGCGAATGCTGCTGGTAGTTTTGATGGCACGAATGATTGA
Transcript:
CRO_T008289
ATGGCTCACCGCAAAGATCTTGCTCCCGACAAAGAACCTTTAGACTGGAATACAAGAATGAAGATTGCAGCTGGTGCAGCTAAAGGATTGGAATATTTGCATGACAAAGCTAATCCACCAGTCATATATAGAGACTTAAAGTCATCCAACATCCTTCTTGACGAAGGCTTTCATCCCAAGTTATCAGATTTCGGGCTTGCAAAGCTTGGTCCTGTTGGGGATAAGACTCATGTATCAACAAGGGTGATGGGAACATATGGTTATTGTGCTCCGGAATATGCCATGACTGGCCAACTTACCTTAAAATCTGATGTATATAGTTTTGGAGTTGTCTTCCTTGAACTCATCACAGGGCGGAAGGCCATTGATAATACAAGGGGCCCAGGAGAGCATAATCTTGTTGCATGGGCACGACCACTTTTCAAGGACCGGAGGAAATTTCCAAAGATGGCTGATCCACTATTGCAAGGTCGTTATCCAATGCGAGGACTTTACCAAGCGCTGGCAGTGGCAGCTATGTGCTTGCAAGAACAAGCAGCTACAAGACCTCTAATCGGGGATGTGGTGACTGCACTGACCTATCTAGCCTCCCAAACATATGATCCCAATGCAGCTGCTGCACAGAATAACAGGGTCGGCCCATCTACCCCAAGGAGCAAGGAAGACCGAAGGAGCATGGCAGATGGGGTGGATAGTCCAGATGAACATGGGCATGGTTTTCACGGTTCCCCTTCAACCCACAAAAAGTCTCCTGATTTCAGGAAAAGGGACTCTCCCAGGGAGTTCAATCCCGGTTCAGACTTGAGAAGAATTGAAACAGGCGGTGGTTCTGGAAGGAAATGGGGTCTGGATGAATTAGACCGTGCTGAATCTCAAAAGGACAGCCCTGTGAGCGCAGGTAGAACCAGAGAAACACCAAGGAATCGTGATTTAGACAGAGAACGCGCAGTTGCAGAAGCAAAAGTATGGGGTGAAAACTGGAGAGAGAGAAAGAAAGCGAATGCTGCTGGTAGTTTTGATGGCACGAATGATTGA
Protein:
CRO_T008289
MAHRKDLAPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAAAQNNRVGPSTPRSKEDRRSMADGVDSPDEHGHGFHGSPSTHKKSPDFRKRDSPREFNPGSDLRRIETGGGSGRKWGLDELDRAESQKDSPVSAGRTRETPRNRDLDRERAVAEAKVWGENWRERKKANAAGSFDGTND*

Genome:

CRO_T008289

ATGGCTCACCGCAAAGGTGAACACATTAAAGTGCATTATTCTATCACACAAAATGATGAATGTAACTGCAATATGCGTTCTATTCCGGCGGGATTATTGTTGTTCTTTTACATACTTAGTATGGTGGATAATCTGTAGGTATCATGCTGATTAATGCTGATCTCAAGCACTTCTTGACTGATCAATGAATTATTGTCCTCCCTAGTTGCTTAAGCTTTTTCAAGGGTAACTCCCGGTTAGTTGGGCGTTAGGTTGTGGTCCATCCTCAAGCAACCGGGTAATTCCAGTCTACTTTTGCTTGAACAGAATTTCCTGGTCTTTTCAGTATATGGTTTGCTTGAGGGTTCTAGGAATTGAACTGCTCATATGTGAAGGAAACAATTATTCATTTCAAAAAGCTTCTCATGTATTTCAAGTCACATGTGACTGTCATGTGGCAGATAGTTTGGTAAACTTGCATTAGCATCCTTAATTACTTCTAGAAATGCCAATAAGTTCTACAGCAACCCTAACTTGAATTCAAATGGTTTGTATCGGATTCTCTTGTTATGTTTATGGTTTCTTAGCAGGCAAAAAATTACCTGGCTTCAGTTTCTTTGGCCACAATTAATGGGGGGAAAATGGGTATAAATTAAATGCTCTTGCAATGGTTTAATCGTGCACAAATAGTTTGGTGTACTGAGGCATTGGTAGGATATCAGTCAGAGCAATAGCATGGTAACCGAAACTAGAAAGTATAAGCAGTGGAAATAAGGATAGGAGATGCAAACAGCATTATGCTTGTGGAAGCTCATGCTTTACCACTATTAATTTCTTTCTTAGATGGTTATGCTCTGGGGTTAACGGTGATTCTTCTTTCGAGTTGTCGATTAGCATAGTTGCAAAATAATGTCAGAGTGGATTGTTTTTCGTAGTGTATGAAATTGATAAACTAAGCTGTTCATGTTAATTTCATTAAGAAAATGCAATCAAATTTGGCATGTTTGTAAAGACGGCTGACATTTAATGAGTTGATATTAGCTGAGGACTTATGATGGCTTGTAGTTGCTGGGAAGTTAAAAGCGATAAATATCCTTGTGGAATGACAGTAGGAACTTCTCAACCTATGGAAATACTTTAGAAGTTGCTAAGCAATTATTTTGGCTTACCTGGTAGCATATCATTGCTAGTTCCCCTAGAGCTGTCTTTCTCTCGCAACGAATATAAAGTTTCGTTTGACTAGGATGATGAATTTGAAGAAAGTAAGAAAGTAACTCATGAGACTAAAATAAATAAACTATAGCTAAAATAGTCGAACCGCTGCATCACACATAGCATTTGATGCAAAGACTTAGGGCTAACATTGGCACTCCTATGCAGATCTTGCTCCCGACAAAGAACCTTTAGACTGGAATACAAGAATGAAGATTGCAGCTGGTGCAGCTAAAGGATTGGAATATTTGCATGACAAAGCTAATCCACCAGTCATATATAGAGACTTAAAGTCATCCAACATCCTTCTTGACGAAGGCTTTCATCCCAAGTTATCAGATTTCGGGCTTGCAAAGCTTGGTCCTGTTGGGGATAAGACTCATGTATCAACAAGGGTGATGGGAACATATGGTTATTGTGCTCCGGAATATGCCATGACTGGCCAACTTACCTTAAAATCTGATGTATATAGTTTTGGAGTTGTCTTCCTTGAACTCATCACAGGGCGGAAGGCCATTGATAATACAAGGGGCCCAGGAGAGCATAATCTTGTTGCATGGGTACGTAATCTTTTCTTTGCTTTTTCACTGAATTTTTAGCGTTATTGTGTTTTTGCAAATTCCTCGATAGATATGTAGTTTAGTGGTTGATCTTTTGGCTGCGATATAGATAGAAACAGGACTTCTTTGTTTTCTTTTTATCCTATGGAAATGTTTTGCAGGCACGACCACTTTTCAAGGACCGGAGGAAATTTCCAAAGATGGCTGATCCACTATTGCAAGGTCGTTATCCAATGCGAGGACTTTACCAAGCGCTGGCAGTGGCAGCTATGTGCTTGCAAGAACAAGCAGCTACAAGACCTCTAATCGGGGATGTGGTGACTGCACTGACCTATCTAGCCTCCCAAACATATGATCCCAATGCAGCTGCTGCACAGAATAACAGGGTCGGCCCATCTACCCCAAGGAGCAAGGAAGACCGAAGGAGCATGGCAGATGGGGTGGATAGTCCAGATGAACATGGGCATGGTTTTCACGGTTCCCCTTCAACCCACAAAAAGTCTCCTGATTTCAGGAAAAGGGACTCTCCCAGGGAGTTCAATCCCGGTTCAGACTTGAGAAGAATTGAAACAGGCGGTGGTTCTGGAAGGAAATGGGGTCTGGATGAATTAGACCGTGCTGAATCTCAAAAGGACAGCCCTGTGAGCGCAGGTAGAACCAGAGAAACACCAAGGAATCGTGATTTAGACAGAGAACGCGCAGTTGCAGAAGCAAAAGTATGGGGTGAAAACTGGAGAGAGAGAAAGAAAGCGAATGCTGCTGGTAGTTTTGATGGCACGAATGATTGA

CDS:

Transcript:

Protein:

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004715	non-membrane spanning protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0005886	plasma membrane	cellular_component
GO:0018108	peptidyl-tyrosine phosphorylation	biological_process
GO:0045087	innate immune response	biological_process

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.2.2

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Pathway ID
--	--	--	--	--

PlantCyC

Gene	Enzyme ID	Description	Pathway	Pathway id
--	--	--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.22	Pkinase	15	130	4.4e-25

Expression pattern

SRA Experiment	Description	FPKM
ERR364390	mixed tissue CK	36.6665
SRR122236	mixed tissue RA CK	16.36765
SRR122237	mixed tissue RB CK	15.11475
SRR122250	callus YE 0.3mg/ml CK	24.0243
SRR122247	callus YE 0.3mg/ml 6h	28.6568
SRR122248	callus YE 0.3mg/ml 12h	24.052
SRR122249	callus YE 0.3mg/ml 24h	29.4978
SRR122242	callus MeJA 100um 0h	29.8075
SRR122246	callus MeJA 100um 6h	32.8166
SRR122240	callus MeJA 100um 12h	25.9592
SRR122241	callus MeJA 100um 24h	31.4126
SRR122239	flower CK 1	36.8348
SRR1271859	flower CK 2	50.36075
SRR1144633	healthy flowers CK	48.25915
SRR1144634	flowers PnWB infected	33.10935
SRR122257	hairy root CK	35.2478
SRR122258	hairy root MeJA 250um CK	55.6618
SRR122259	hairy root MeJA 250um 24h	64.314
SRR122256	hairy root RebH F CK	50.5399
SRR122255	hairy root TDCi CK	40.0776
SRR122260	hairy root TDCi MeJA 250um CK	50.3621
SRR122261	hairy root TDCi MeJA 250um 24h	60.0691
SRR1820161	Hairy roots CK BAI1 14	48.1455
SRR1820157	Hairy roots CK BAI1 18	46.0493
SRR1820149	Hairy roots CK BAI1 19	44.4793
SRR1820238	Hairy roots CK GUS 3	39.3523
SRR1820233	Hairy roots CK GUS 4	40.612
SRR1820326	Hairy roots CK GUS 5	37.5809
SRR2098821	hairy roots OE AS CK rep1	35.6387
SRR2099440	hairy roots OE AS CK rep2	47.2261
SRR122252	immature leaf CK	26.5357
SRR342023	leaf CK 1	24.6778
SRR342022	leaf CK 2	28.23405
SRR342019	leaf CK 3	28.5223
SRR342017	leaf CK 4	28.0509
SRR1271857	leaf CK 5	27.53415
SRR122251	mature leaf CK	28.7012
SRR648705	root CK 1	16.4245
SRR1271858	root CK 2	38.32955
SRR122254	root CK 3	45.516
SRR648707	root MeJA 24h	17.044
SRR648709	root MeJA 24h DSN normalized	17.85215
SRR837772	seedling CK	55.69015
SRR122243	sterile seedlings AE CK 1	30.2388
SRR122245	sterile seedlings AE CK 2	28.6588
SRR122244	sterile seedlings AF MeJA 6um 12d	33.2796
SRR122253	stem CK	46.1302
SRR646572	shoots CK	29.18405
SRR647068	shoots MeJA 6h 1	26.8755
SRR646596	shoots MeJA 6h 2	28.7504
SRR646604	shoots MeJA 24h	40.85115
SRR924147	suspension cells EX ORCA2 CK	16.917
SRR924148	suspension cells EX ORCA3 CK	12.96375

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