CRO_T013611's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T013611 | Cysteine proteinases superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G57810 | 3.00E-71 | Cysteine proteinases superfamily protein |
| Arabidopsis thaliana | AT2G38025 | 1.00E-12 | Cysteine proteinases superfamily protein |
| Arabidopsis thaliana | AT2G38025 | 1.00E-12 | Cysteine proteinases superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM002024 | Transcription_related, Transcription factor: EIL vesicle fusion with Golgi apparatus Golgi to vacuole transport ER to Golgi transport vesicle membrane late endosome membrane retrograde transport, endosome to Golgi protein targeting to vacuole intra-Golgi vesicle-mediated transport Ubiquitin_Proteasome_system, DUB: OTU SNAP receptor activity SNARE binding ER to Golgi vesicle-mediated transport SNARE complex MAPK signaling pathway - plant Ubiquitin_Proteasome_system, E3 adaptor: DWD endoplasmic reticulum membrane Golgi apparatus transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T013611 | scaffolds.min_1000bp | scaffold_3062470 | 43616 | 47333 | - |
Gene detail image
| Genome: |
| CRO_T013611 |
| CDS: |
| CRO_T013611 |
| Transcript: |
| CRO_T013611 |
| Protein: |
| CRO_T013611 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | OTU |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02338.16 | OTU | 194 | 320 | 6.5e-26 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 19.4147 | |
| SRR122236 | mixed tissue RA CK | 72.78085 | |
| SRR122237 | mixed tissue RB CK | 69.7776 | |
| SRR122250 | callus YE 0.3mg/ml CK | 36.102 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 32.689 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 33.2651 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 27.3549 | |
| SRR122242 | callus MeJA 100um 0h | 21.0363 | |
| SRR122246 | callus MeJA 100um 6h | 44.3948 | |
| SRR122240 | callus MeJA 100um 12h | 41.2201 | |
| SRR122241 | callus MeJA 100um 24h | 23.6717 | |
| SRR122239 | flower CK 1 | 16.9072 | |
| SRR1271859 | flower CK 2 | 18.56815 | |
| SRR1144633 | healthy flowers CK | 15.93695 | |
| SRR1144634 | flowers PnWB infected | 20.4332 | |
| SRR122257 | hairy root CK | 24.9628 | |
| SRR122258 | hairy root MeJA 250um CK | 20.8929 | |
| SRR122259 | hairy root MeJA 250um 24h | 28.9821 | |
| SRR122256 | hairy root RebH F CK | 20.5633 | |
| SRR122255 | hairy root TDCi CK | 18.2811 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 18.1201 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 22.9271 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 33.6479 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 26.2125 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 29.8867 | |
| SRR1820238 | Hairy roots CK GUS 3 | 25.0428 | |
| SRR1820233 | Hairy roots CK GUS 4 | 24.4595 | |
| SRR1820326 | Hairy roots CK GUS 5 | 26.9281 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 26.5371 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 14.323 | |
| SRR122252 | immature leaf CK | 18.9991 | |
| SRR342023 | leaf CK 1 | 24.59205 | |
| SRR342022 | leaf CK 2 | 19.70955 | |
| SRR342019 | leaf CK 3 | 27.431 | |
| SRR342017 | leaf CK 4 | 24.1872 | |
| SRR1271857 | leaf CK 5 | 33.80745 | |
| SRR122251 | mature leaf CK | 17.9849 | |
| SRR648705 | root CK 1 | 64.04825 | |
| SRR1271858 | root CK 2 | 22.424 | |
| SRR122254 | root CK 3 | 21.6095 | |
| SRR648707 | root MeJA 24h | 57.49135 | |
| SRR648709 | root MeJA 24h DSN normalized | 58.61665 | |
| SRR837772 | seedling CK | 20.7114 | |
| SRR122243 | sterile seedlings AE CK 1 | 20.291 | |
| SRR122245 | sterile seedlings AE CK 2 | 29.2644 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 21.3136 | |
| SRR122253 | stem CK | 16.9796 | |
| SRR646572 | shoots CK | 20.1049 | |
| SRR647068 | shoots MeJA 6h 1 | 17.81135 | |
| SRR646596 | shoots MeJA 6h 2 | 19.19815 | |
| SRR646604 | shoots MeJA 24h | 20.6648 | |
| SRR924147 | suspension cells EX ORCA2 CK | 52.13525 | |
| SRR924148 | suspension cells EX ORCA3 CK | 57.41105 |