CRO_T013907's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T013907 | GDA1/CD39 nucleoside phosphatase family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G14230 | 7.00E-136 | GDA1/CD39 nucleoside phosphatase family protein |
| Arabidopsis thaliana | AT1G14250 | 1.00E-133 | GDA1/CD39 nucleoside phosphatase family protein |
| Arabidopsis thaliana | AT1G14240 | 7.00E-117 | GDA1/CD39 nucleoside phosphatase family protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001060 | growth factor activity myo-inositol:proton symporter activity myo-inositol transport cell proliferation pyrimidine deoxyribonucleotides de novo biosynthesis I protein-cysteine S-palmitoyltransferase activity pyrimidine ribonucleotides interconversion Ubiquitin_Proteasome_system, E3 adaptor: BTB glucose transmembrane transport sugar:proton symporter activity glucose transmembrane transporter activity glucose import proton transport Purine metabolism membrane integral component of plasma membrane extracellular region | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T013907 | scaffolds.min_1000bp | scaffold_3064122 | 12067 | 16597 | + |
Gene detail image
| Genome: |
| CRO_T013907 |
| CDS: |
| CRO_T013907 |
| Transcript: |
| CRO_T013907 |
| Protein: |
| CRO_T013907 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K01510 | ENTPD1_3_8 | EC:3.6.1.5 | Purine metabolism | ko00230 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| CRO_T013907 | EC-3.6.1.15 | pyrimidine deoxyribonucleotides de novo biosynthesis I | PWY-7184 | |
| CRO_T013907 | EC-3.6.1.15 | pyrimidine ribonucleotides interconversion | - | |
| CRO_T013907 | EC-3.6.1.6 | pyrimidine ribonucleotides interconversion | - | |
| CRO_T013907 | EC-3.6.1.5 | pyrimidine ribonucleotides interconversion | - |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01150.14 | GDA1_CD39 | 77 | 515 | 7e-78 |
Expression pattern
 | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 36.0767 | |
| SRR122236 | mixed tissue RA CK | 31.6709 | |
| SRR122237 | mixed tissue RB CK | 31.34625 | |
| SRR122250 | callus YE 0.3mg/ml CK | 61.5764 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 43.7695 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 50.8645 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 55.881 | |
| SRR122242 | callus MeJA 100um 0h | 59.9943 | |
| SRR122246 | callus MeJA 100um 6h | 37.8407 | |
| SRR122240 | callus MeJA 100um 12h | 39.2524 | |
| SRR122241 | callus MeJA 100um 24h | 60.093 | |
| SRR122239 | flower CK 1 | 52.7473 | |
| SRR1271859 | flower CK 2 | 51.524 | |
| SRR1144633 | healthy flowers CK | 56.6996 | |
| SRR1144634 | flowers PnWB infected | 42.2222 | |
| SRR122257 | hairy root CK | 27.6024 | |
| SRR122258 | hairy root MeJA 250um CK | 31.1712 | |
| SRR122259 | hairy root MeJA 250um 24h | 35.8601 | |
| SRR122256 | hairy root RebH F CK | 28.4061 | |
| SRR122255 | hairy root TDCi CK | 26.5331 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 28.1946 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 35.0279 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 32.3673 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 32.5288 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 31.1251 | |
| SRR1820238 | Hairy roots CK GUS 3 | 32.4085 | |
| SRR1820233 | Hairy roots CK GUS 4 | 33.4953 | |
| SRR1820326 | Hairy roots CK GUS 5 | 37.59295 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 24.1699 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 21.3241 | |
| SRR122252 | immature leaf CK | 31.9967 | |
| SRR342023 | leaf CK 1 | 26.9679 | |
| SRR342022 | leaf CK 2 | 28.52025 | |
| SRR342019 | leaf CK 3 | 27.09865 | |
| SRR342017 | leaf CK 4 | 26.8017 | |
| SRR1271857 | leaf CK 5 | 28.96695 | |
| SRR122251 | mature leaf CK | 38.9865 | |
| SRR648705 | root CK 1 | 21.6505 | |
| SRR1271858 | root CK 2 | 19.2961 | |
| SRR122254 | root CK 3 | 36.1563 | |
| SRR648707 | root MeJA 24h | 25.47265 | |
| SRR648709 | root MeJA 24h DSN normalized | 25.99145 | |
| SRR837772 | seedling CK | 21.7775 | |
| SRR122243 | sterile seedlings AE CK 1 | 27.111 | |
| SRR122245 | sterile seedlings AE CK 2 | 32.6326 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 30.825 | |
| SRR122253 | stem CK | 34.9093 | |
| SRR646572 | shoots CK | 40.5113 | |
| SRR647068 | shoots MeJA 6h 1 | 41.73165 | |
| SRR646596 | shoots MeJA 6h 2 | 41.30405 | |
| SRR646604 | shoots MeJA 24h | 45.9133 | |
| SRR924147 | suspension cells EX ORCA2 CK | 21.5275 | |
| SRR924148 | suspension cells EX ORCA3 CK | 21.8251 |