CRO_T026177's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T026177 | ubiquitin-specific protease |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G49600 | 3.00E-18 | UBP26|ubiquitin-specific protease 26 |
| Arabidopsis thaliana | AT5G10790 | 6.00E-17 | UBP22|ubiquitin-specific protease 22 |
| Arabidopsis thaliana | AT4G24560 | 1.00E-16 | UBP16|ubiquitin-specific protease 16 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T003849 CRO_T026859 CRO_T027469 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000437 | Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Ubiquitin_Proteasome_system, DUB: USP receptor signaling protein serine/threonine kinase activity single-organism process Transcription_related, Transcription factor: HB chromosome | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T026177 | scaffolds.min_1000bp | scaffold_3061175 | 32926 | 40552 | + |
Gene detail image
| Genome: |
| CRO_T026177 |
| CDS: |
| CRO_T026177 |
| Transcript: |
| CRO_T026177 |
| Protein: |
| CRO_T026177 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0044699 | single-organism process | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01753.15 | zf-MYND | 117 | 154 | 2.3e-08 |
| PF00443.26 | UCH | 624 | 928 | 2.6e-41 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 11.90665 | |
| SRR122236 | mixed tissue RA CK | 0.5153645 | |
| SRR122237 | mixed tissue RB CK | 0.64771 | |
| SRR122250 | callus YE 0.3mg/ml CK | 25.1612 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 26.6365 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 28.6256 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 24.0177 | |
| SRR122242 | callus MeJA 100um 0h | 24.9369 | |
| SRR122246 | callus MeJA 100um 6h | 29.4011 | |
| SRR122240 | callus MeJA 100um 12h | 29.0081 | |
| SRR122241 | callus MeJA 100um 24h | 27.1678 | |
| SRR122239 | flower CK 1 | 32.7455 | |
| SRR1271859 | flower CK 2 | 25.6239 | |
| SRR1144633 | healthy flowers CK | 21.93055 | |
| SRR1144634 | flowers PnWB infected | 16.7363 | |
| SRR122257 | hairy root CK | 41.4385 | |
| SRR122258 | hairy root MeJA 250um CK | 28.17 | |
| SRR122259 | hairy root MeJA 250um 24h | 28.2266 | |
| SRR122256 | hairy root RebH F CK | 32.4019 | |
| SRR122255 | hairy root TDCi CK | 45.7045 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 25.1021 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 23.5678 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 52.5344 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 54.1593 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 53.0388 | |
| SRR1820238 | Hairy roots CK GUS 3 | 51.7349 | |
| SRR1820233 | Hairy roots CK GUS 4 | 52.9223 | |
| SRR1820326 | Hairy roots CK GUS 5 | 58.52585 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 15.1356 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 26.3201 | |
| SRR122252 | immature leaf CK | 29.0385 | |
| SRR342023 | leaf CK 1 | 22.2401 | |
| SRR342022 | leaf CK 2 | 28.36035 | |
| SRR342019 | leaf CK 3 | 23.2311 | |
| SRR342017 | leaf CK 4 | 23.48155 | |
| SRR1271857 | leaf CK 5 | 19.9365 | |
| SRR122251 | mature leaf CK | 28.134 | |
| SRR648705 | root CK 1 | 7.467435 | |
| SRR1271858 | root CK 2 | 29.37795 | |
| SRR122254 | root CK 3 | 37.5199 | |
| SRR648707 | root MeJA 24h | 10.126835 | |
| SRR648709 | root MeJA 24h DSN normalized | 10.803 | |
| SRR837772 | seedling CK | 16.281 | |
| SRR122243 | sterile seedlings AE CK 1 | 23.2045 | |
| SRR122245 | sterile seedlings AE CK 2 | 23.7905 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 24.5294 | |
| SRR122253 | stem CK | 38.8125 | |
| SRR646572 | shoots CK | 21.90365 | |
| SRR647068 | shoots MeJA 6h 1 | 22.35735 | |
| SRR646596 | shoots MeJA 6h 2 | 24.58825 | |
| SRR646604 | shoots MeJA 24h | 26.7125 | |
| SRR924147 | suspension cells EX ORCA2 CK | 7.24206 | |
| SRR924148 | suspension cells EX ORCA3 CK | 12.8004 |