CRO_T028420's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T028420 | conserved hypothetical protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G13100 | 7.00E-133 | unknown protein |
| Arabidopsis thaliana | AT5G13100 | 7.00E-133 | unknown protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001075 | Transcription_related, Transcription factor: Alfin-like trans-cinnamoyl-CoA biosynthesis 4-hydroxybenzoate biosynthesis I (eukaryotes) umbelliferone biosynthesis Ubiquitin_Proteasome_system, DUB: OTU Flavonoid biosynthesis histone binding vindoline and vinblastine biosynthesis Phenylpropanoid biosynthesis dioxygenase activity ligase activity metabolic process | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T028420 | scaffolds.min_1000bp | scaffold_3064344 | 24140 | 27754 | - |
Gene detail image
| Genome: |
| CRO_T028420 |
| CDS: |
| CRO_T028420 |
| Transcript: |
| CRO_T028420 |
| Protein: |
| CRO_T028420 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | OTU |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 25.25515 | |
| SRR122236 | mixed tissue RA CK | 10.692695 | |
| SRR122237 | mixed tissue RB CK | 11.62955 | |
| SRR122250 | callus YE 0.3mg/ml CK | 54.7094 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 47.8902 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 50.9238 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 62.1749 | |
| SRR122242 | callus MeJA 100um 0h | 88.9348 | |
| SRR122246 | callus MeJA 100um 6h | 26.1523 | |
| SRR122240 | callus MeJA 100um 12h | 35.771 | |
| SRR122241 | callus MeJA 100um 24h | 90.0307 | |
| SRR122239 | flower CK 1 | 27.6904 | |
| SRR1271859 | flower CK 2 | 17.6293 | |
| SRR1144633 | healthy flowers CK | 32.88175 | |
| SRR1144634 | flowers PnWB infected | 48.28305 | |
| SRR122257 | hairy root CK | 36.433 | |
| SRR122258 | hairy root MeJA 250um CK | 37.0619 | |
| SRR122259 | hairy root MeJA 250um 24h | 35.732 | |
| SRR122256 | hairy root RebH F CK | 30.6052 | |
| SRR122255 | hairy root TDCi CK | 31.4332 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 40.9529 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 29.7758 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 22.7314 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 22.7814 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 22.0789 | |
| SRR1820238 | Hairy roots CK GUS 3 | 21.4564 | |
| SRR1820233 | Hairy roots CK GUS 4 | 21.3663 | |
| SRR1820326 | Hairy roots CK GUS 5 | 27.53205 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 37.8512 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 28.2388 | |
| SRR122252 | immature leaf CK | 48.715 | |
| SRR342023 | leaf CK 1 | 58.4495 | |
| SRR342022 | leaf CK 2 | 63.7658 | |
| SRR342019 | leaf CK 3 | 50.61115 | |
| SRR342017 | leaf CK 4 | 55.354 | |
| SRR1271857 | leaf CK 5 | 23.8975 | |
| SRR122251 | mature leaf CK | 50.5879 | |
| SRR648705 | root CK 1 | 20.9091 | |
| SRR1271858 | root CK 2 | 57.9157 | |
| SRR122254 | root CK 3 | 34.6835 | |
| SRR648707 | root MeJA 24h | 25.8182 | |
| SRR648709 | root MeJA 24h DSN normalized | 24.67145 | |
| SRR837772 | seedling CK | 28.2879 | |
| SRR122243 | sterile seedlings AE CK 1 | 39.7847 | |
| SRR122245 | sterile seedlings AE CK 2 | 41.4474 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 33.6508 | |
| SRR122253 | stem CK | 48.9218 | |
| SRR646572 | shoots CK | 47.8629 | |
| SRR647068 | shoots MeJA 6h 1 | 52.69215 | |
| SRR646596 | shoots MeJA 6h 2 | 42.1423 | |
| SRR646604 | shoots MeJA 24h | 72.51565 | |
| SRR924147 | suspension cells EX ORCA2 CK | 17.36285 | |
| SRR924148 | suspension cells EX ORCA3 CK | 26.7814 |