CRO_T029825's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T029825 | Protein kinase superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G13530 | 2.00E-47 | MAP3KE1|MAP3K EPSILON PROTEIN KINASE;MAPKKK7|mitogen-activated protein kinase kinase kinase 7 |
| Arabidopsis thaliana | AT3G07980 | 3.00E-45 | MAP3KE2|MAP3K EPSILON PROTEIN KINASE 2;MAPKKK6|mitogen-activated protein kinase kinase kinase 6 |
| Arabidopsis thaliana | AT1G23700 | 2.00E-44 | Protein kinase superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000437 | Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Ubiquitin_Proteasome_system, DUB: USP receptor signaling protein serine/threonine kinase activity single-organism process Transcription_related, Transcription factor: HB chromosome | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T029825 | scaffolds.min_1000bp | scaffold_3068650 | 12209 | 21427 | - |
Gene detail image
| Genome: |
| CRO_T029825 |
| CDS: |
| CRO_T029825 |
| Transcript: |
| CRO_T029825 |
| Protein: |
| CRO_T029825 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0004702 | receptor signaling protein serine/threonine kinase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0005694 | chromosome | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.1.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.22 | Pkinase | 266 | 520 | 1.7e-69 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 11.6502 | |
| SRR122236 | mixed tissue RA CK | 5.12395 | |
| SRR122237 | mixed tissue RB CK | 5.22404 | |
| SRR122250 | callus YE 0.3mg/ml CK | 32.0372 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 31.592 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 26.5758 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 35.2046 | |
| SRR122242 | callus MeJA 100um 0h | 31.7407 | |
| SRR122246 | callus MeJA 100um 6h | 34.5862 | |
| SRR122240 | callus MeJA 100um 12h | 27.6364 | |
| SRR122241 | callus MeJA 100um 24h | 24.7071 | |
| SRR122239 | flower CK 1 | 22.7423 | |
| SRR1271859 | flower CK 2 | 18.0919 | |
| SRR1144633 | healthy flowers CK | 20.61615 | |
| SRR1144634 | flowers PnWB infected | 20.788 | |
| SRR122257 | hairy root CK | 39.0256 | |
| SRR122258 | hairy root MeJA 250um CK | 37.5105 | |
| SRR122259 | hairy root MeJA 250um 24h | 24.3516 | |
| SRR122256 | hairy root RebH F CK | 44.7497 | |
| SRR122255 | hairy root TDCi CK | 32.5861 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 33.8771 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 19.1036 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 50.2564 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 39.9839 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 39.4699 | |
| SRR1820238 | Hairy roots CK GUS 3 | 38.2007 | |
| SRR1820233 | Hairy roots CK GUS 4 | 38.3361 | |
| SRR1820326 | Hairy roots CK GUS 5 | 41.617 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 5.49647 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 12.8668 | |
| SRR122252 | immature leaf CK | 26.4529 | |
| SRR342023 | leaf CK 1 | 18.2587 | |
| SRR342022 | leaf CK 2 | 20.61335 | |
| SRR342019 | leaf CK 3 | 18.1979 | |
| SRR342017 | leaf CK 4 | 20.28675 | |
| SRR1271857 | leaf CK 5 | 31.7157 | |
| SRR122251 | mature leaf CK | 20.6462 | |
| SRR648705 | root CK 1 | 10.32185 | |
| SRR1271858 | root CK 2 | 20.37115 | |
| SRR122254 | root CK 3 | 28.3003 | |
| SRR648707 | root MeJA 24h | 9.011525 | |
| SRR648709 | root MeJA 24h DSN normalized | 12.2424 | |
| SRR837772 | seedling CK | 8.2702 | |
| SRR122243 | sterile seedlings AE CK 1 | 28.4579 | |
| SRR122245 | sterile seedlings AE CK 2 | 19.8997 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 27.042 | |
| SRR122253 | stem CK | 28.4678 | |
| SRR646572 | shoots CK | 20.4601 | |
| SRR647068 | shoots MeJA 6h 1 | 15.463 | |
| SRR646596 | shoots MeJA 6h 2 | 17.03345 | |
| SRR646604 | shoots MeJA 24h | 13.27565 | |
| SRR924147 | suspension cells EX ORCA2 CK | 8.938315 | |
| SRR924148 | suspension cells EX ORCA3 CK | 12.61875 |