CRO_T032956's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T032956 | JOSEPHIN-like protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G29640 | 4.00E-51 | JOSL|JOSEPHIN-like protein |
| Arabidopsis thaliana | AT2G29640 | 4.00E-51 | JOSL|JOSEPHIN-like protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM001115 | omega peptidase activity Ubiquitin_Proteasome_system, DUB: Josephin thiol-dependent ubiquitin-specific protease activity protein deubiquitination spliceosomal complex assembly U5 snRNP U4/U6 x U5 tri-snRNP complex spliceosomal complex | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T032956 | scaffolds.min_1000bp | scaffold_3068530 | 37589 | 39633 | - |
Gene detail image
| Genome: |
| CRO_T032956 |
| CDS: |
| CRO_T032956 |
| Transcript: |
| CRO_T032956 |
| Protein: |
| CRO_T032956 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity | molecular_function |
| GO:0008242 | omega peptidase activity | molecular_function |
| GO:0016579 | protein deubiquitination | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | Josephin |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02099.14 | Josephin | 19 | 183 | 5.5e-38 |
Expression pattern
 | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 19.15125 | |
| SRR122236 | mixed tissue RA CK | 95.323 | |
| SRR122237 | mixed tissue RB CK | 93.3856 | |
| SRR122250 | callus YE 0.3mg/ml CK | 12.5122 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 8.87239 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 8.53186 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 10.262 | |
| SRR122242 | callus MeJA 100um 0h | 12.6753 | |
| SRR122246 | callus MeJA 100um 6h | 14.0274 | |
| SRR122240 | callus MeJA 100um 12h | 14.7406 | |
| SRR122241 | callus MeJA 100um 24h | 11.0698 | |
| SRR122239 | flower CK 1 | 11.7767 | |
| SRR1271859 | flower CK 2 | 10.3303 | |
| SRR1144633 | healthy flowers CK | 18.1261 | |
| SRR1144634 | flowers PnWB infected | 11.4728 | |
| SRR122257 | hairy root CK | 8.78171 | |
| SRR122258 | hairy root MeJA 250um CK | 6.25751 | |
| SRR122259 | hairy root MeJA 250um 24h | 7.19378 | |
| SRR122256 | hairy root RebH F CK | 11.1266 | |
| SRR122255 | hairy root TDCi CK | 9.36013 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 6.03693 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 10.2594 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 8.04974 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 10.0639 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 9.99355 | |
| SRR1820238 | Hairy roots CK GUS 3 | 10.8293 | |
| SRR1820233 | Hairy roots CK GUS 4 | 9.77082 | |
| SRR1820326 | Hairy roots CK GUS 5 | 10.35315 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 10.5518 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 8.04018 | |
| SRR122252 | immature leaf CK | 10.2117 | |
| SRR342023 | leaf CK 1 | 6.8512 | |
| SRR342022 | leaf CK 2 | 4.95112 | |
| SRR342019 | leaf CK 3 | 5.749375 | |
| SRR342017 | leaf CK 4 | 5.170965 | |
| SRR1271857 | leaf CK 5 | 27.41055 | |
| SRR122251 | mature leaf CK | 11.5203 | |
| SRR648705 | root CK 1 | 15.21505 | |
| SRR1271858 | root CK 2 | 4.653095 | |
| SRR122254 | root CK 3 | 5.71433 | |
| SRR648707 | root MeJA 24h | 12.902 | |
| SRR648709 | root MeJA 24h DSN normalized | 14.84055 | |
| SRR837772 | seedling CK | 6.561405 | |
| SRR122243 | sterile seedlings AE CK 1 | 10.9276 | |
| SRR122245 | sterile seedlings AE CK 2 | 4.37862 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 8.25506 | |
| SRR122253 | stem CK | 14.5045 | |
| SRR646572 | shoots CK | 12.6511 | |
| SRR647068 | shoots MeJA 6h 1 | 8.731045 | |
| SRR646596 | shoots MeJA 6h 2 | 9.93602 | |
| SRR646604 | shoots MeJA 24h | 9.63444 | |
| SRR924147 | suspension cells EX ORCA2 CK | 14.86675 | |
| SRR924148 | suspension cells EX ORCA3 CK | 12.05345 |