miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|
| mature | cro-miR172-2 | scaffold_3059922 | 35561 | 35583 | + |
| precursor | cro-MIR172-2 | scaffold_3059922 | 35451 | 35640 | + |
Sequence and structure information
Mature sequence[cro-miR172-2] UGAGAAUCUUGAUGAUGCUGCAU |
Stem-loop sequence[cro-MIR172-2] GGACUUGCAUGGAAAAAGAUGAUAUUCCUUUAUACCAAGAGUCAGUGCUUGGAGAUGCAGCACCAUCAAGAUUCACAAACCUUAUACUUAAUUAAGUCAUUCUUAAUGUUUGAGAAUCUUGAUGAUGCUGCAUCACCAAACAUAGACUAUCAUAAAAUCACCUCGCCUUUUGAAGCACACUGUAUCGUCU |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method |
|---|
| CRO_T005384 | | | ncRNA: | 23 | UACGUCGUAGUAGUUCUAAGAGU | 1 | | | | | =*|=||||||||||||||||*|| | | | | targets: | 48 | GCGUAGCAUCAUCAAGAUUCACA | 70 |
| hypothetical protein | 1.5 | psRNATarget[Detail] | | CRO_T011543 | | | ncRNA: | 23 | UACGUCGUAGUAGUUCUAAGAGU | 1 | | | | | *|||||||||||||=|||||||| | | | | targets: | 3275 | CUGCAGCAUCAUCAGGAUUCUCA | 3297 |
| related to AP2.7 | 1.5 | psRNATarget[Detail] | | CRO_T014006 | | | ncRNA: | 23 | UACGUCGUAGUAGUUCUAAGAGU | 1 | | | | | *|||||||||||||=|||||||* | | | | targets: | 3543 | CUGCAGCAUCAUCAGGAUUCUCU | 3565 |
| related to AP2.7 | 2.5 | psRNATarget[Detail] | | CRO_T015281 | | | ncRNA: | 23 | UACGUCGUAGUAGUUCUAAGAGU | 1 | | | | | **|=|||||||||||||||*||| | | | | targets: | 1350 | UCGUAGCAUCAUCAAGAUUGUCA | 1372 |
| hypothetical protein | 1.5 | psRNATarget[Detail] |
|
Expression pattern
| Tissue | Treat | FPKM value |
|---|
| seedling | control | 3.77 |
| seedling | MeJA treatment 1h | 3.73 |
| seedling | MeJA treatment 8h | 2.82 |
| seedling | MeJA treatment 24h | 5.02 |