miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|
| mature | cro-miR397 | scaffold_2989916 | 34619 | 34639 | + |
| precursor | cro-MIR397 | scaffold_2989916 | 34504 | 34781 | + |
Sequence and structure information
Mature sequence[cro-miR397] UCAUUGAGUGCAGCGUUGAUG |
Stem-loop sequence[cro-MIR397] GGUACUAUUUAAUGAACGAAAAUGCAUAUUCAUUACCUCAUUGUUCUCCUAUGUAUUGGGGAAGUUUGUAGUAUAAUGCUUAGGAGAAGAACAAAAAUCAAAGAGCUAAAAAAUAUCAUUGAGUGCAGCGUUGAUGAAUUCCAAGUUCCAAGUUUUGGUAUUUGUAUUCUCACUGUGGAUUCAUCAUCGCUGCACCCAAUCAUAUUUUUACUUCUUUGAAACCAGCUUUGAGAUGGGUAAUCGGGUAUUCUAUUUUUACUUCUUUCGGUAAGUUUACU |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method |
|---|
| CRO_T001508 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | =||||||||||||||||||*| | | | | targets: | 1155 | UAUCAACGCUGCACUCAAUCA | 1175 |
| laccase | 1.5 | psRNATarget[Detail] | | CRO_T004377 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | *||=||||||||||||||||| | | | | targets: | 2346 | GAUUAACGCUGCACUCAAUGA | 2366 |
| Laccase/Diphenol oxidase family protein | 1 | psRNATarget[Detail] | | CRO_T005813 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | *||||||||||||||*||||| | | | | targets: | 1432 | GAUCAACGCUGCACUAAAUGA | 1452 |
| laccase | 1.5 | psRNATarget[Detail] | | CRO_T006406 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | ||||||||||||||||||*|| | | | | targets: | 1020 | CAUCAACGCUGCACUCAACGA | 1040 |
| laccase | 1.5 | psRNATarget[Detail] | | CRO_T006720 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | ||||||||||||||||||*|| | | | | targets: | 117 | CAUCAACGCUGCACUCAACGA | 137 |
| laccase | 1.5 | psRNATarget[Detail] | | CRO_T008150 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | =|||||=||||||||||||*| | | | | targets: | 2016 | UAUCAAUGCUGCACUCAAUAA | 2036 |
| laccase | 2.5 | psRNATarget[Detail] | | CRO_T015448 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | *||||||||||||||*||||| | | | | targets: | 2764 | AAUCAACGCUGCACUGAAUGA | 2784 |
| Laccase/Diphenol oxidase family protein | 1.5 | psRNATarget[Detail] | | CRO_T020739 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | ||||||=|||||||||||*|| | | | | targets: | 4834 | CAUCAAUGCUGCACUCAACGA | 4854 |
| Laccase/Diphenol oxidase family protein | 2.5 | psRNATarget[Detail] | | CRO_T027051 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | *|||||||||||||||||*|| | | | | targets: | 1143 | AAUCAACGCUGCACUCAACGA | 1163 |
| laccase | 1.5 | psRNATarget[Detail] | | CRO_T027293 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | ||||||=||||||||||||*| | | | | targets: | 7606 | CAUCAAUGCUGCACUCAAUCA | 7626 |
| laccase | 2.5 | psRNATarget[Detail] | | CRO_T028037 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | ||||||||||||||||||*|| | | | | targets: | 18 | CAUCAACGCUGCACUCAACGA | 38 |
| laccase | 1.5 | psRNATarget[Detail] | | CRO_T028193 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | *|||||=||||||||=||||| | | | | targets: | 2943 | GAUCAAUGCUGCACUUAAUGA | 2963 |
| laccase | 2.5 | psRNATarget[Detail] | | CRO_T033445 | | | ncRNA: | 21 | GUAGUUGCGACGUGAGUUACU | 1 | | | | | *||||||||||||||*||||| | | | | targets: | 760 | GAUCAACGCUGCACUGAAUGA | 780 |
| laccase | 1.5 | psRNATarget[Detail] |
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Expression pattern
| Tissue | Treat | FPKM value |
|---|
| seedling | control | 26.67 |
| seedling | MeJA treatment 1h | 16.31 |
| seedling | MeJA treatment 8h | 8.88 |
| seedling | MeJA treatment 24h | 19.05 |