miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| mature | cro-miR399-2 | scaffold_3052172 | 6304 | 6324 | + |
| precursor | cro-MIR399-2 | scaffold_3052172 | 6208 | 6354 | + |
Sequence and structure information
Mature sequence[cro-miR399-2] UGCCAAAGGAGAAUUGCCCUG | |
Stem-loop sequence[cro-MIR399-2] GAACGGCAGAUGGUGAUCAUGUGGAGUUUUGAAUAACAGUGUAAUUCUCCUUUGGCAUGCACGGUUACAAACAACUUAUACUUGUACAGUACACUGUGCCAAAGGAGAAUUGCCCUGCCAUUCACUCUCACAGUCCUAGUGCAGUUU | |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRO_T009850 |
| phosphate | 1.5 | psRNATarget[Detail] |
Expression pattern
| Tissue | Treat | FPKM value |
|---|---|---|
| seedling | control | 6.97 |
| seedling | MeJA treatment 1h | 6.86 |
| seedling | MeJA treatment 8h | 4.61 |
| seedling | MeJA treatment 24h | 10.91 |