miRNA detailed info

miRNA detailed information

miRNA detail image

Location informaition

Type	ID	Scaffold	Start	End	Strand
mature	cro-novel-1	scaffold_3067231	17717	17740	+
precursor	cro-NOVEL-1	scaffold_3067231	17617	18117	+

Sequence and structure information

Mature sequence[cro-novel-1] UUCUUCAUAAUGAUCUGUAUCUAC
Stem-loop sequence[cro-NOVEL-1] UCCGAGCCCAGUUUUGAAAAAAAAAUAAUUUCAACUUUUUUUACAUCUAAAUUGAUAUUCUUCUACAAACUCUACAAAUUCUUCAUACAAAUUCUACAAAUUCUUCAUAAUGAUCUGUAUCUACCUCCAAUACAAGUUCAAUGUAGAGAGAAGUUAGAAAGAAAUUGUGUAGAGAGAUAAAGAGUAGGAAGGAUGAAGGAAAAUAAUGAUUUUUUUCGCGCUAUACAUUCAUAUUCUUGAGUUAGAUUUAUCGGCCCCAUAGGAAAUCUAACUCGGGAAUAUGAAUGUAUAGUGCGAAAAAAAUCAUUAUUUUCUCUACUCUUUCUCUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUCGUAUUGGAGGUAGAUAUAGAUCAUUACAAAGAAUUUGUAGAAGAAAAUAUCAAUUUAGAUGUAAAAAAGUUGAAAUAAUUUUUUUUUUAAAACUGAGCUCGGA
Secondary structure of stem-loop sequence To make high resolution picture for your own, please download the .ps file.

Mature sequence[cro-novel-1]

UUCUUCAUAAUGAUCUGUAUCUAC

Stem-loop sequence[cro-NOVEL-1]

UCCGAGCCCAGUUUUGAAAAAAAAAUAAUUUCAACUUUUUUUACAUCUAAAUUGAUAUUCUUCUACAAACUCUACAAAUUCUUCAUACAAAUUCUACAAAUUCUUCAUAAUGAUCUGUAUCUACCUCCAAUACAAGUUCAAUGUAGAGAGAAGUUAGAAAGAAAUUGUGUAGAGAGAUAAAGAGUAGGAAGGAUGAAGGAAAAUAAUGAUUUUUUUCGCGCUAUACAUUCAUAUUCUUGAGUUAGAUUUAUCGGCCCCAUAGGAAAUCUAACUCGGGAAUAUGAAUGUAUAGUGCGAAAAAAAUCAUUAUUUUCUCUACUCUUUCUCUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUCGUAUUGGAGGUAGAUAUAGAUCAUUACAAAGAAUUUGUAGAAGAAAAUAUCAAUUUAGAUGUAAAAAAGUUGAAAUAAUUUUUUUUUUAAAACUGAGCUCGGA

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

miRNA target information

Target gene

Alignment

Annotation

Expection

Method

CRO_T002892

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	3072	AUAGAUAUAAAUCAUUAUGAAGAA	3095

hypothetical protein

psRNATarget[Detail]

CRO_T003070

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	2153	GUAGAUAUAGAUCAUUAUGAAGAA	2176

ROP-interactive CRIB motif-containing protein

psRNATarget[Detail]

CRO_T008554

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|*\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	2109	GUACAUAUGGAUCAUUAUGAAGAA	2132

hypothetical protein

psRNATarget[Detail]

CRO_T009199

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|*\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	4907	GUACAUAUGGAUCAUUAUGAAGAA	4930

hypothetical protein

psRNATarget[Detail]

CRO_T011650

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	1678	GUAGAUAUAGAUCAUUAUGAAGAA	1701

Na+/H+ antiporter

psRNATarget[Detail]

CRO_T013527

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|*\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	1590	GUAGCUAUAGAUCAUUAUGAAGAA	1613

hypothetical protein

psRNATarget[Detail]

CRO_T015179

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|
targets:	1873	AUAUAUAUAGAUCAUUAUGAAAAA	1896

zinc transporter 5 precursor

2.5

psRNATarget[Detail]

CRO_T016925

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	195	GUAGAUAUGGAUCAUUAUGAAGAA	218

hypothetical protein

psRNATarget[Detail]

CRO_T017905

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|
targets:	12425	GUAGAUAUAGAUCAUUACGAAGAA	12448

GDSL-like Lipase/Acylhydrolase superfamily protein

2.5

psRNATarget[Detail]

CRO_T019711

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	3992	GUAGAUAUGGAUCAUUAUGAAGAA	4015

COG4 transport protein domain containing protein

psRNATarget[Detail]

CRO_T019810

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	777	GUAGAUAUGGAUCAUUAUGAAGAA	800

hypothetical protein

psRNATarget[Detail]

CRO_T019847

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|\|*
targets:	2564	GAACAUAUGGAUCAUUAUGAAGAU	2587

hypothetical protein

psRNATarget[Detail]

CRO_T021225

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|\|\|\|=\|\|\|*\|\|\|\|\|\|\|\|\|\|\|
targets:	562	GUAGAUACGGAUGAUUAUGAAGAA	585

hypothetical protein

2.5

psRNATarget[Detail]

CRO_T023667

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|*\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	1054	GUAAAUAUGGAUCAUUAUGAAGAA	1077

hypothetical protein

psRNATarget[Detail]

CRO_T024404

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		*\|\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	6649	UUAGAUAUGGAUCAUUAUGAAGAA	6672

hypothetical protein

psRNATarget[Detail]

CRO_T025806

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|
targets:	9977	GUAGAUAUAGAUCAUUAUGAAUAA	10000

beta-galactosidase

2.5

psRNATarget[Detail]

CRO_T027375

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|\|*
targets:	5351	GAACAUAUGGAUCAUUAUGAAGAU	5374

Proline-rich extensin-like family protein

psRNATarget[Detail]

CRO_T031864

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|\|\|=\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	3689	GUAGAUAUAUAUCAUUAUGAAGAA	3712

alpha/beta-Hydrolases superfamily protein

psRNATarget[Detail]

CRO_T032898

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|*\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	2021	GUAAAUAUAGAUCAUUAUGAAGAA	2044

GDSL-like Lipase/Acylhydrolase superfamily protein

psRNATarget[Detail]

CRO_T033807

ncRNA:	24	CAUCUAUGUCUAGUAAUACUUCUU	1
		\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	8675	GUAGAUAUAGAUCAUUAUGAAGAA	8698

geranylgeranyl pyrophosphate synthase

psRNATarget[Detail]

Expression pattern

Tissue	Treat	FPKM value
seedling	control	41.11
seedling	MeJA treatment 1h	14.68
seedling	MeJA treatment 8h	21.03
seedling	MeJA treatment 24h	20.51