miRNA detailed information

miRNA detail image

detail
more details in UCSC

Location informaition

TypeIDScaffoldStartEndStrand
maturecro-novel-128scaffold_30597231607416052-
precursorcro-NOVEL-128scaffold_30597231609016008-

Sequence and structure information

Mature sequence[cro-novel-128]

AACUGUGUAGAGAGAGAAAGAUA

Stem-loop sequence[cro-NOVEL-128]

AGAGAAGUUAGAAAGAAACUGUGUAGAGAGAGAAAGAUAAGAAAAAAUAAUGAUUUUUUUCUCGUUAUACAUUCAUAUUCUCG

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.


miRNA target information

Target geneAlignmentAnnotationExpectionMethod
CRO_T002892
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   **|||||||||||=||||||||| 
 targets:2981CCUCUUUCUCUCUUUACACAGUU3003
hypothetical protein1.5psRNATarget[Detail]
CRO_T003070
 ncRNA:23AUA-GAAAGAGAGAGAUGUGUCAA1
   |||-|||||||||||||||||*|| 
 targets:2059UAUUCUUUCUCUCUCUACACAAUU2082
ROP-interactive CRIB motif-containing protein1.5psRNATarget[Detail]
CRO_T004032
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   *||||||||=|*||||||||||| 
 targets:8222CAUCUUUCUUUGUCUACACAGUU8244
Transducin/WD40 repeat-like superfamily protein2.5psRNATarget[Detail]
CRO_T006948
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   **||||||||||||||||||*|| 
 targets:1523ACUCUUUCUCUCUCUACACAAUU1545
hypothetical protein1.5psRNATarget[Detail]
CRO_T007276
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   **||||||||||||||||||*|| 
 targets:11927CCUCUUUCUCUCUCUACACAAUU11949
Eukaryotic aspartyl protease family protein1.5psRNATarget[Detail]
CRO_T011650
 ncRNA:23AU-AGAAAGAGAGAGAUGUGUCAA1
   ||-||||||||||||||||||*|| 
 targets:1584UACUCUUUCUCUCUCUACACAAUU1607
Na+/H+ antiporter1.5psRNATarget[Detail]
CRO_T013527
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   *|||||||||||||||||||||| 
 targets:1498CAUCUUUCUCUCUCUACACAGUU1520
hypothetical protein0psRNATarget[Detail]
CRO_T015179
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   |||=|*||||||||||=|||||| 
 targets:1780UAUUUCUCUCUCUCUAUACAGUU1802
zinc transporter 5 precursor2.5psRNATarget[Detail]
CRO_T017905
 ncRNA:23AUA-GAAAGAGAGAGAUGUGUCAA1
   |||-|||||||||||||||||*|| 
 targets:12331UAUACUUUCUCUCUCUACACAAUU12354
GDSL-like Lipase/Acylhydrolase superfamily protein1.5psRNATarget[Detail]
CRO_T019347
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   *||||||||||||=||||||||| 
 targets:2368CAUCUUUCUCUCUUUACACAGUU2390
hypothetical protein1.5psRNATarget[Detail]
CRO_T019991
 ncRNA:23AUAGAAAGAGAGAGAUGUGU-CAA1
   *|*|||||||||||||||||-||| 
 targets:4666AAACUUUCUCUCUCUACACAUGUU4689
ferrochelatase3psRNATarget[Detail]
CRO_T020697
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   |**|||||||||||||||||*|| 
 targets:797UCACUUUCUCUCUCUACACACUU819
hypothetical protein1.5psRNATarget[Detail]
CRO_T023667
 ncRNA:23AU-AGAAAGAGAGAGAUGUGUCAA1
   ||-||||||||||||||||||*|| 
 targets:963UACUCUUUCUCUCUCUACACAAUU986
hypothetical protein1.5psRNATarget[Detail]
CRO_T023999
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   **||||||||||||||||||||| 
 targets:1139CCUCUUUCUCUCUCUACACAGUU1161
ERD (early response to dehydration) six-like0psRNATarget[Detail]
CRO_T025393
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   *|||||||||||||||||||||| 
 targets:517CAUCUUUCUCUCUCUACACAGUU539
Protein kinase superfamily protein0psRNATarget[Detail]
CRO_T025806
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   *|||||||||||||||||||||| 
 targets:9884CAUCUUUCUCUCUCUACACAGUU9906
beta-galactosidase0psRNATarget[Detail]
CRO_T027273
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   |**|||||||||||||||||*|| 
 targets:2132UCACUUUCUCUCUCUACACACUU2154
hypothetical protein1.5psRNATarget[Detail]
CRO_T027491
 ncRNA:23AU-AGAAAGAGAGAGAUGUGUCAA1
   ||-||||||||||||||||||*|| 
 targets:514UACUCUUUCUCUCUCUACACAAUU537
Terpenoid cyclases/Protein prenyltransferases superfamily protein1.5psRNATarget[Detail]
CRO_T031380
 ncRNA:23AU-AGAAAGAGAGAGAUGUGUCAA1
   ||-||||||*|||||||||||*|| 
 targets:2825UACUCUUUCACUCUCUACACAAUU2848
hypothetical protein2.5psRNATarget[Detail]
CRO_T031864
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   *||*||||||||||||||||||| 
 targets:3596CAUGUUUCUCUCUCUACACAGUU3618
alpha/beta-Hydrolases superfamily protein0psRNATarget[Detail]
CRO_T032174
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   *|||||||||||||||||||*|| 
 targets:981AAUCUUUCUCUCUCUACACAAUU1003
hypothetical protein1.5psRNATarget[Detail]
CRO_T032901
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   |**||||=||||||||||||*|| 
 targets:875UCACUUUUUCUCUCUACACAUUU897
hypothetical protein2.5psRNATarget[Detail]
CRO_T033136
 ncRNA:23AUAGAAAGAGAGAGAUGUGUCAA1
   |*||||||||||||||||||*|| 
 targets:139UUUCUUUCUCUCUCUACACAAUU161
hypothetical protein1.5psRNATarget[Detail]
CRO_T033637
 ncRNA:23AU-AGAAAGAGAGAGAUGUGUCAA1
   ||-|||||||=||||||||||*|| 
 targets:5409UACUCUUUCUUUCUCUACACAAUU5432
hypothetical protein2.5psRNATarget[Detail]
CRO_T033807
 ncRNA:23AU-AGAAAGAGAGAGAUGUGUCAA1
   ||-||||||||||||||||||*|| 
 targets:8581UACUCUUUCUCUCUCUACACAAUU8604
geranylgeranyl pyrophosphate synthase1.5psRNATarget[Detail]

Expression pattern

TissueTreatFPKM value
seedlingcontrol81.02
seedlingMeJA treatment 1h65.97
seedlingMeJA treatment 8h161.29
seedlingMeJA treatment 24h68.54
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Maintained by Jiajie She & Hengyu Yan in Zhen Su's Lab | China Agricultural University
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