miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|
| mature | cro-novel-143 | scaffold_2970316 | 29841 | 29864 | + |
| precursor | cro-NOVEL-143 | scaffold_2970316 | 29787 | 29870 | + |
Sequence and structure information
Mature sequence[cro-novel-143] AUGUAUUUUGAUCUUGGUAACAAU |
Stem-loop sequence[cro-NOVEL-143] ACAUGAGCAUCAGAUCAAAAUAUGGAGAUAUAAAGUAAAAAUAACCUUGUAUAUAUGUAUUUUGAUCUUGGUAACAAUACAUGC |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method |
|---|
| CRO_T004597 | | | ncRNA: | 24 | UAACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | ||||**|||||||||||||||||* | | | | targets: | 463 | AUUGAAACCAAGAUCAAAAUACAG | 486 |
| hypothetical protein | 2 | psRNATarget[Detail] | | CRO_T006445 | | | ncRNA: | 24 | UAACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | |||*|||*|||||||||||||||* | | | | targets: | 3349 | AUUAUUAGCAAGAUCAAAAUACAG | 3372 |
| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | 2 | psRNATarget[Detail] | | CRO_T014939 | | | ncRNA: | 24 | UAACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | |||||*|*|||||||||||||||* | | | | targets: | 5474 | AUUGUAAGCAAGAUCAAAAUACAG | 5497 |
| zinc ion binding;nucleic acid binding | 3 | psRNATarget[Detail] | | CRO_T016249 | | | ncRNA: | 24 | UAACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | |||*|||*|||||||||||||||* | | | | targets: | 6388 | AUUAUUAACAAGAUCAAAAUACAA | 6411 |
| DNAse I-like superfamily protein | 2 | psRNATarget[Detail] | | CRO_T017333 | | | ncRNA: | 24 | UAACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | ||||||||||||||=||||||||* | | | | targets: | 3266 | AUUGUUACCAAGAUUAAAAUACAA | 3289 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T017333 | | | ncRNA: | 24 | UAACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | *|||||||||||||=||||||||* | | | | targets: | 3297 | UUUGUUACCAAGAUUAAAAUACAA | 3320 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T021608 | | | ncRNA: | 24 | UA--ACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | ||--|||*|*|||||||||||||||* | | | | targets: | 3941 | AUACUGUAAACAAGAUCAAAAUACAG | 3966 |
| hypothetical protein | 3 | psRNATarget[Detail] | | CRO_T023338 | | | ncRNA: | 24 | UAACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | |||*|||*|||||||||||||||* | | | | targets: | 2620 | AUUAUUAGCAAGAUCAAAAUACAG | 2643 |
| DNAse I-like superfamily protein | 2 | psRNATarget[Detail] | | CRO_T026882 | | | ncRNA: | 24 | UAACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | |||*|||*=||||||||||||||* | | | | targets: | 5072 | AUUAUUAGUAAGAUCAAAAUACAG | 5095 |
| Major facilitator superfamily protein | 3 | psRNATarget[Detail] | | CRO_T027403 | | | ncRNA: | 24 | UAACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | |||*|||*|||||||||||||||* | | | | targets: | 3690 | AUUAUUAGCAAGAUCAAAAUACAG | 3713 |
| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | 2 | psRNATarget[Detail] | | CRO_T027833 | | | ncRNA: | 24 | UAACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | |||||*|*|||||||||||||||* | | | | targets: | 3203 | AUUGUAAGCAAGAUCAAAAUACAG | 3226 |
| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | 3 | psRNATarget[Detail] | | CRO_T031048 | | | ncRNA: | 24 | UAACAAUGGUUCUAGUUUUAUGUA | 1 | | | | | |||||*|*=||||||||||||||| | | | | targets: | 624 | AUUGUAAAUAAGAUCAAAAUACAU | 647 |
| NB-ARC domain-containing disease resistance protein | 3 | psRNATarget[Detail] |
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Expression pattern
| Tissue | Treat | FPKM value |
|---|
| seedling | control | 7.46 |
| seedling | MeJA treatment 1h | 7.17 |
| seedling | MeJA treatment 8h | 4.51 |
| seedling | MeJA treatment 24h | 7.15 |