miRNA detailed information

miRNA detail image

detail
more details in UCSC

Location informaition

TypeIDScaffoldStartEndStrand
maturecro-novel-155scaffold_30002261203412057+
precursorcro-NOVEL-155scaffold_30002261197412057+

Sequence and structure information

Mature sequence[cro-novel-155]

AGAAGUGUAUUAAACGAUCCUGAG

Stem-loop sequence[cro-NOVEL-155]

AUCGGUAUCUUUUAGUACAUCUUUUAGCAUAAAUAAAUCCUAAAACUCUAAAAGGUAAAAAGAAGUGUAUUAAACGAUCCUGAG

Secondary structure of stem-loop sequence

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miRNA target information

Target geneAlignmentAnnotationExpectionMethod
CRO_T011662
 ncRNA:24GAGUCCUAGCAAAUUAUGUGAAGA1
   |||--||*|||||||||=|||||| 
 targets:1829CUC--GAGCGUUUAAUAUACUUCU1850
XB3 ortholog 1 in Arabidopsis thaliana2.5psRNATarget[Detail]
CRO_T022171
 ncRNA:24GAGUCCUAGCAAAUUAUGU-GAAGA1
   |||**||||||||||||||-||||| 
 targets:14139CUCUAGAUCGUUUAAUACAUCUUCU14163
cytochrome P450, family 81, subfamily H, polypeptide3psRNATarget[Detail]
CRO_T023667
 ncRNA:24GAGUCCUAGCAAAUUAUGUGAAGA1
   **||*|||||||||||||||||=| 
 targets:3862GCCAAGAUCGUUUAAUACACUUUU3885
hypothetical protein1.5psRNATarget[Detail]
CRO_T026111
 ncRNA:24GAGUCCUAGCAAAUUAUGUGA-AGA1
   =|=||||||||||||||||||-||| 
 targets:9246UUUAGGAUCGUUUAAUACACUCUCU9270
DUF4079 domain containing protein3psRNATarget[Detail]
CRO_T031304
 ncRNA:24GAGUCCUAGCAAAUUAUGUGAAGA1
   ||||*||||*|||||||||=|||| 
 targets:3665CUCAAGAUCAUUUAAUACAUUUCU3688
nodulin MtN21 /EamA-like transporter family protein2.5psRNATarget[Detail]
CRO_T032765
 ncRNA:24GAGUCCUAGCAAAUUAUGUGAAGA1
   ||---|||||||||||||||||** 
 targets:4256CU---GAUCGUUUAAUACACUUAG4276
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein2.5psRNATarget[Detail]

Expression pattern

TissueTreatFPKM value
seedlingcontrol26.67
seedlingMeJA treatment 1h25.24
seedlingMeJA treatment 8h9.67
seedlingMeJA treatment 24h33.16
TOP

Maintained by Jiajie She & Hengyu Yan in Zhen Su's Lab | China Agricultural University
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