miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|
| mature | cro-novel-160 | scaffold_3065910 | 18706 | 18727 | + |
| precursor | cro-NOVEL-160 | scaffold_3065910 | 18673 | 18730 | + |
Sequence and structure information
Mature sequence[cro-novel-160] UCCUCUUCGGAUAACACCUGAG |
Stem-loop sequence[cro-NOVEL-160] UUGUGAGGAUGGGUAUAAUAAGAGGGUUUAUGUUCCUCUUCGGAUAACACCUGAGCAU |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method |
|---|
| CRO_T000063 | | | ncRNA: | 22 | GAGUCCACAAUAGGCUUCUCCU | 1 | | | | | |*|||||**||||||||||||| | | | | targets: | 134 | CCCAGGUAAUAUCCGAAGAGGA | 155 |
| hypothetical protein | 2 | psRNATarget[Detail] | | CRO_T008040 | | | ncRNA: | 22 | GAGUCCACAAUAGGCUUCUCCU | 1 | | | | | |*|||||||||||||||||||| | | | | targets: | 200 | CACAGGUGUUAUCCGAAGAGGA | 221 |
| hypothetical protein | 0 | psRNATarget[Detail] | | CRO_T012903 | | | ncRNA: | 22 | GAGUCCACAAUAGGCUUCUCCU | 1 | | | | | ||||||||*||||||||||||| | | | | targets: | 215 | CUCAGGUGCUAUCCGAAGAGGA | 236 |
| hypothetical protein | 1 | psRNATarget[Detail] | | CRO_T015676 | | | ncRNA: | 22 | GAGUCCACAAUAGGCUUCUCCU | 1 | | | | | |*|||||||||||=|||||||| | | | | targets: | 218 | CACAGGUGUUAUCUGAAGAGGA | 239 |
| hypothetical protein | 1.5 | psRNATarget[Detail] | | CRO_T024327 | | | ncRNA: | 22 | GAGUCCACAAUAGGCUUCUCCU | 1 | | | | | *|*||||*|||||||||*|||| | | | | targets: | 1586 | GUGAGGUAUUAUCCGAAAAGGA | 1607 |
| Nin one binding (NOB1) Zn-ribbon like domain containing protein | 2.5 | psRNATarget[Detail] | | CRO_T029341 | | | ncRNA: | 22 | GAGUCCACAAUAGGCUUCUCCU | 1 | | | | | |****||*|||||||||||||| | | | | targets: | 2659 | CGAUUGUCUUAUCCGAAGAGGA | 2680 |
| hypothetical protein | 3 | psRNATarget[Detail] | | CRO_T030763 | | | ncRNA: | 22 | GAGUCCACAAUAGGCUUCUCCU | 1 | | | | | |*|||||||||||=|||||||| | | | | targets: | 218 | CACAGGUGUUAUCUGAAGAGGA | 239 |
| hypothetical protein | 1.5 | psRNATarget[Detail] | | CRO_T033708 | | | ncRNA: | 22 | GAGUCCACAAUAGGCUUCUCCU | 1 | | | | | |*|||||||||*|||||||||| | | | | targets: | 771 | CACAGGUGUUAACCGAAGAGGA | 792 |
| hypothetical protein | 1.5 | psRNATarget[Detail] |
|
Expression pattern
| Tissue | Treat | FPKM value |
|---|
| seedling | control | 68 |
| seedling | MeJA treatment 1h | 42.97 |
| seedling | MeJA treatment 8h | 36.41 |
| seedling | MeJA treatment 24h | 43.59 |