miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|
| mature | cro-novel-162 | scaffold_3062420 | 12906 | 12883 | - |
| precursor | cro-NOVEL-162 | scaffold_3062420 | 12959 | 12881 | - |
Sequence and structure information
Mature sequence[cro-novel-162] UGACUUUAAAACUAAGGACGUGAU |
Stem-loop sequence[cro-NOVEL-162] ACACUCAUGACUUUGUAUGGAAGUGCAAUGCCCUAUCCCGUAAACACCUAGCAUGACUUUAAAACUAAGGACGUGAUGA |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method |
|---|
| CRO_T002248 | | | ncRNA: | 24 | UAGUGCAGGAAUCAAAAUUUCAGU | 1 | | | | | |||||||=||||*||||||||||| | | | | targets: | 716 | AUCACGUUCUUAAUUUUAAAGUCA | 739 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T002547 | | | ncRNA: | 24 | UAGUGCAGGAAUCAAAAUUUCAGU | 1 | | | | | *|=|=||||*||*||||||||||| | | | | targets: | 1798 | UUUAUGUCCGUAAUUUUAAAGUCA | 1821 |
| conserved hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T004058 | | | ncRNA: | 24 | UAGUGCAGGAAUCAAAAUUUCAGU | 1 | | | | | ||*||||||*||*||||||||||| | | | | targets: | 2169 | AUAACGUCCGUAAUUUUAAAGUCA | 2192 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T004610 | | | ncRNA: | 24 | UAGUGCAGGAAUCAAAAUUUCAGU | 1 | | | | | ||*||||||*||*||||||||||| | | | | targets: | 1431 | AUAACGUCCGUACUUUUAAAGUCA | 1454 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T010803 | | | ncRNA: | 24 | UAGUGCAGGAAUCAAAAUUUCAGU | 1 | | | | | ||=||||||*||*||||||||||| | | | | targets: | 264 | AUUACGUCCGUAAUUUUAAAGUCA | 287 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T023668 | | | ncRNA: | 24 | UAGUGCAGGAAUCAAAAUUUCAGU | 1 | | | | | *|*||||||*||*||||||||||| | | | | targets: | 1957 | CUAACGUCCGUAAUUUUAAAGUCA | 1980 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T025171 | | | ncRNA: | 24 | UAGUGCAGGAAUCAAAAUUUCAGU | 1 | | | | | |||||||=||||*||||||||||| | | | | targets: | 1918 | AUCACGUUCUUAAUUUUAAAGUCA | 1941 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T027389 | | | ncRNA: | 24 | UAGUGCAGGAAUCAAAAUUUCAGU | 1 | | | | | ||*|=||||*||*||||||||||| | | | | targets: | 837 | AUAAUGUCCGUACUUUUAAAGUCA | 860 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T028930 | | | ncRNA: | 24 | UAGUGCAGGAAUCAAAAUUUCAGU | 1 | | | | | ||*||||||*||*||||||||||| | | | | targets: | 2864 | AUAACGUCCGUACUUUUAAAGUCA | 2887 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T032467 | | | ncRNA: | 24 | UAGUGCAGGAAUCAAAAUUUCAGU | 1 | | | | | ||*||||||*||*||||||||||| | | | | targets: | 2540 | AUAACGUCCGUACUUUUAAAGUCA | 2563 |
| hypothetical protein | 2.5 | psRNATarget[Detail] |
|
Expression pattern
| Tissue | Treat | FPKM value |
|---|
| seedling | control | 8.13 |
| seedling | MeJA treatment 1h | 8.13 |
| seedling | MeJA treatment 8h | 6.91 |
| seedling | MeJA treatment 24h | 6.99 |