miRNA detailed information

miRNA detail image

detail
more details in UCSC

Location informaition

TypeIDScaffoldStartEndStrand
maturecro-novel-34scaffold_30494001111611096-
precursorcro-NOVEL-34scaffold_30494001120511087-

Sequence and structure information

Mature sequence[cro-novel-34]

UGGCAUCAUCUCCUUGCGGAC

Stem-loop sequence[cro-NOVEL-34]

AGAGGUUCAGUACGCAGGAGAGAUGGCGCCGUCGACUAGUUCAGUCAGUUUCUACAGAGAUUUUAGACUGGAAAGAUAAGACUUGUCGAUGGCAUCAUCUCCUUGCGGACUGAACCUUG

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.


miRNA target information

Target geneAlignmentAnnotationExpectionMethod
CRO_T000712
 ncRNA:21CAGGCGUUCCUCUACUACGGU1
   ||||||||||||||||||||| 
 targets:5513GUCCGCAAGGAGAUGAUGCCA5533
20S proteasome beta subunit G10psRNATarget[Detail]
CRO_T002520
 ncRNA:21CAGGCGUUCCUCUACUACGGU1
   |*=||*|*||||||||||||| 
 targets:65GAUCGGACGGAGAUGAUGCCA85
hypothetical protein3psRNATarget[Detail]
CRO_T010229
 ncRNA:21CAGGCGUUCCUCUACUACGGU1
   **=|*|||||||||||||||* 
 targets:13524ACUCACAAGGAGAUGAUGCCC13544
calcium-dependent protein kinase3psRNATarget[Detail]
CRO_T029216
 ncRNA:21CAGGCGUUCCUCUACUACGGU1
   |*=||*|*||||||||||||| 
 targets:321GAUCGGAUGGAGAUGAUGCCA341
hypothetical protein3psRNATarget[Detail]
CRO_T030924
 ncRNA:21CAGGCGUUCCUCUACUACGGU1
   **=*||||||||||||||||* 
 targets:1289CAUGGCAAGGAGAUGAUGCCU1309
CBL-interacting protein kinase3psRNATarget[Detail]
CRO_T033397
 ncRNA:21CAGGCGUUCCUCUACUACGGU1
   |*=||*|*||||||||||||| 
 targets:211GAUCGGACGGAGAUGAUGCCA231
hypothetical protein3psRNATarget[Detail]

Expression pattern

TissueTreatFPKM value
seedlingcontrol11.87
seedlingMeJA treatment 1h6.78
seedlingMeJA treatment 8h2.96
seedlingMeJA treatment 24h3
TOP

Maintained by Jiajie She & Hengyu Yan in Zhen Su's Lab | China Agricultural University
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