miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|
| mature | cro-novel-39 | scaffold_2983184 | 38274 | 38251 | - |
| precursor | cro-NOVEL-39 | scaffold_2983184 | 38425 | 38245 | - |
Sequence and structure information
Mature sequence[cro-novel-39] AUGGAUCAAGUUCAUGACAGAAUU |
Stem-loop sequence[cro-NOVEL-39] UUGAAAAAUUAUGUUAUGAAUCUGAUUCACAUCCUCAUUCAUGUAUCGUGUAGUUUAUAUUAAUUAAUAGCACAUCACCUCCGAUUGUUGAUUAUGUCUUCAAUUAUGGAGAUAACGGCUUAAAAUAGACCAAAUGAUUUAUGAGGGGGACAUGGAUCAAGUUCAUGACAGAAUUUUUCAC |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method |
|---|
| CRO_T000805 | | | ncRNA: | 24 | UUAA---GACAGUACUUGAACUAGGUA | 1 | | | | | *|||---=|||=||||||||*|||||| | | | | targets: | 2043 | UAUUGGAUUGUUAUGAACUUUAUCCAU | 2069 |
| RING/U-box superfamily protein | 2.5 | psRNATarget[Detail] | | CRO_T010000 | | | ncRNA: | 24 | UUAAGACA---GUACUUGAACUAGGUA | 1 | | | | | =*||=|||---|||||||||||||||| | | | | targets: | 5965 | GUUUUUGUAUUCAUGAACUUGAUCCAU | 5991 |
| hypothetical protein | 3 | psRNATarget[Detail] | | CRO_T018340 | | | ncRNA: | 24 | UUAAGACAGUACUUGAACUAGGUA | 1 | | | | | *|||=|*|||*||||||||||||* | | | | targets: | 2921 | CAUUUUUUCAGGAACUUGAUCCAA | 2944 |
| alpha-soluble NSF attachment protein | 3 | psRNATarget[Detail] | | CRO_T023129 | | | ncRNA: | 24 | UUAAGACAGUACUUGAACUAGGUA | 1 | | | | | ||*|||||=||||||||||||=|| | | | | targets: | 961 | AAAUCUGUUAUGAACUUGAUCUAU | 984 |
| BEL1-like homeodomain | 2.5 | psRNATarget[Detail] | | CRO_T030591 | | | ncRNA: | 24 | UU--AAGACAGUACUUGAACUAGGUA | 1 | | | | | ||--||*|*|||||||=||||||||| | | | | targets: | 2459 | AACCUUGUUUCAUGAAUUUGAUCCAU | 2484 |
| Major facilitator superfamily protein | 2.5 | psRNATarget[Detail] |
|
Expression pattern
| Tissue | Treat | FPKM value |
|---|
| seedling | control | 6.81 |
| seedling | MeJA treatment 1h | 5.41 |
| seedling | MeJA treatment 8h | 4.98 |
| seedling | MeJA treatment 24h | 4.23 |