miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|
| mature | cro-novel-40 | scaffold_3060615 | 62196 | 62219 | + |
| precursor | cro-NOVEL-40 | scaffold_3060615 | 62152 | 62404 | + |
Sequence and structure information
Mature sequence[cro-novel-40] AUGCUCUGUAACAUUUUCUGUAAC |
Stem-loop sequence[cro-NOVEL-40] ACUGAAAACUGCAUAUAUAGGAAUGCAUCAAUCAUGCGGUUCGGAUGCUCUGUAACAUUUUCUGUAACACUCUUUAUAACAUUACUAAUUUGGUGUAUUUUAUUAAUAAAACCUACCAAAUAAAAGAUAAACGCUAAAGAAAAAAGAUAAACCCUAAGGGAGAAAACAUAUUAUAAAAGGUAAUGUUACAGCAAAUGUUACAAUGGAUCUUGAGUGUCAAUCAUGGGCCUCCUAUGAGUUAUGUUUUUUUAGC |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method |
|---|
| CRO_T004812 | | | ncRNA: | 24 | CAAUGUCUUUUACAAUGUCUCGUA | 1 | | | | | |||||||=|||||||||||||*|| | | | | targets: | 15 | GUUACAGGAAAUGUUACAGAGAAU | 38 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T007160 | | | ncRNA: | 24 | CAAUGUCUUUUACAAUGUCUCGUA | 1 | | | | | ||||||*||||||||||||||*|| | | | | targets: | 8821 | GUUACAAAAAAUGUUACAGAGGAU | 8844 |
| 10-formyltetrahydrofolate synthetase | 2.5 | psRNATarget[Detail] | | CRO_T021687 | | | ncRNA: | 24 | CAAUGUCUUUUACAAUGUCUCGUA | 1 | | | | | *|||=||||||||||||||||*|| | | | | targets: | 2353 | AUUAUAGAAAAUGUUACAGAGAAU | 2376 |
| hypothetical protein | 1.5 | psRNATarget[Detail] | | CRO_T025596 | | | ncRNA: | 24 | CAAUGUCUUUUACAAUGUCUCGUA | 1 | | | | | *|*|||*||||||||||||||||| | | | | targets: | 586 | AUAACAUAAAAUGUUACAGAGCAU | 609 |
| basic helix-loop-helix (bHLH) DNA-binding family protein | 1 | psRNATarget[Detail] |
|
Expression pattern
| Tissue | Treat | FPKM value |
|---|
| seedling | control | 130.82 |
| seedling | MeJA treatment 1h | 104.7 |
| seedling | MeJA treatment 8h | 114.57 |
| seedling | MeJA treatment 24h | 108.6 |