miRNA detailed information

miRNA detail image

detail
more details in UCSC

Location informaition

TypeIDScaffoldStartEndStrand
maturecro-novel-60scaffold_306931771687148-
precursorcro-NOVEL-60scaffold_306931772667123-

Sequence and structure information

Mature sequence[cro-novel-60]

UGAUGUGACUUAAUACAAGCU

Stem-loop sequence[cro-NOVEL-60]

GGUUUAUGUUUUUAUGAAUCCCUUGAUUUGUAUUAAGCCACUCCACCUCUCUUAUUAACUAUUUACCUAAUUAUGGAAACAAUAAUUUCAAGAAGGGGUGAUGUGACUUAAUACAAGCUAAAGGGUAUGAAUAAGGAUAUGGAC

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.


miRNA target information

Target geneAlignmentAnnotationExpectionMethod
CRO_T004154
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =||*|||||||||*||||||| 
 targets:1777GGCCUGUAUUAAGCCACAUCA1797
Glycosyl hydrolases family 31 protein2.5psRNATarget[Detail]
CRO_T005478
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   |*=||*||||||||||||||| 
 targets:1408AAUUUAUAUUAAGUCACAUCA1428
beta glucosidase2psRNATarget[Detail]
CRO_T008459
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   |||*|||||||||||||*||| 
 targets:124AGCAUGUAUUAAGUCACYUCA144
hypothetical protein2.5psRNATarget[Detail]
CRO_T010123
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   ||=||*||||||||||||||| 
 targets:2363AGUUUCUAUUAAGUCACAUCA2383
TRICHOME BIREFRINGENCE-LIKE2psRNATarget[Detail]
CRO_T011273
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =*|||*||||||||||||*|| 
 targets:1393GACUUAUAUUAAGUCACACCA1413
cytochrome P450, family 716, subfamily A, polypeptide2.5psRNATarget[Detail]
CRO_T014489
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =||||||||||||*||||||| 
 targets:1793GGCUUGUAUUAAGCCACAUCA1813
retinoblastoma-related1.5psRNATarget[Detail]
CRO_T019357
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =|=|||||||||||||||||| 
 targets:2254GGUUUGUAUUAAGUCACAUCA2274
Trm112p-like protein1psRNATarget[Detail]
CRO_T019968
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =|=||||||||||*||||||| 
 targets:1440GGUUUGUAUUAAGCCACAUCA1460
SAC domain-containing protein2.5psRNATarget[Detail]
CRO_T021528
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =*|*||||||||||||||||= 
 targets:3676GACAUGUAUUAAGUCACAUCG3696
Protein kinase superfamily protein2psRNATarget[Detail]
CRO_T023234
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =|||||||||||||||=|||| 
 targets:2165GGCUUGUAUUAAGUCAUAUCA2185
sulfate transporter 3;41.5psRNATarget[Detail]
CRO_T024850
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   **||||||||||||||||||| 
 targets:2162CACUUGUAUUAAGUCACAUCA2182
Dynein light chain type 1 family protein0psRNATarget[Detail]
CRO_T025523
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =*|||||||||||*||||||| 
 targets:2389GACUUGUAUUAAGCCACAUCA2409
SKP1-like1.5psRNATarget[Detail]
CRO_T029280
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =|=|||||||||||||||||| 
 targets:8575GGUUUGUAUUAAGUCACAUCA8595
ZIP metal ion transporter family1psRNATarget[Detail]
CRO_T030144
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =||||||||||||*||||||| 
 targets:2047GGCUUGUAUUAAGCCACAUCA2067
Pentatricopeptide repeat (PPR-like) superfamily protein1.5psRNATarget[Detail]
CRO_T032668
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =*||||||||||||||=|||| 
 targets:2192GACUUGUAUUAAGUCAUAUCA2212
poly(ADP-ribose) polymerase1.5psRNATarget[Detail]
CRO_T032740
 ncRNA:21UCGAACAUAAUUCAGUGUAGU1
   =|||||||*|||||||||||| 
 targets:5772GGCUUGUAAUAAGUCACAUCA5792
SNARE associated Golgi protein family1.5psRNATarget[Detail]

Expression pattern

TissueTreatFPKM value
seedlingcontrol107.59
seedlingMeJA treatment 1h61.71
seedlingMeJA treatment 8h71.4
seedlingMeJA treatment 24h90.02
TOP

Maintained by Jiajie She & Hengyu Yan in Zhen Su's Lab | China Agricultural University
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