miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| mature | cro-novel-67 | scaffold_3040850 | 13510 | 13533 | + |
| precursor | cro-NOVEL-67 | scaffold_3040850 | 13286 | 13552 | + |
Sequence and structure information
Mature sequence[cro-novel-67] AAAAAUGACUGUUGAUUUUGAAAC | |
Stem-loop sequence[cro-NOVEL-67] ACUUUGUAUCGAUCUCUAGAAUUCACGUUAUUUUAUAUUUUCACACUUUGUAUCGACACUUAAUGUUUUAUUUUUAUCCUUGUAUUUAGGUAUAGUUCCGAGUUAUUUACUCCUAAAUUUCAUCAUAAUGGUGAAUUGUUUAAUUAUAAUGAAGGAGGGUGUGUUAGAAGAACCGUACAUUACAUUGACUUGCGUACUGUUGGUAAUUUUUGUGAGAAGAAUUUAAAAAUGACUGUUGAUUUUGAAACUGUAGAAUUAAUAUUAAGG | |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRO_T007266 |
| MAPK/ERK kinase kinase | 3 | psRNATarget[Detail] |
Expression pattern
| Tissue | Treat | FPKM value |
|---|---|---|
| seedling | control | 7.73 |
| seedling | MeJA treatment 1h | 5.41 |
| seedling | MeJA treatment 8h | 4.79 |
| seedling | MeJA treatment 24h | 5.54 |