miRNA detailed info

miRNA detailed information

miRNA detail image

Location informaition

Type	ID	Scaffold	Start	End	Strand
mature	cro-novel-7	scaffold_3028620	6235	6212	-
precursor	cro-NOVEL-7	scaffold_3028620	6286	5946	-

Sequence and structure information

Mature sequence[cro-novel-7] AUCCUCUGUAAUAUUUCUUGUAAC
Stem-loop sequence[cro-NOVEL-7] CUUCUUUUGUAAUAUGUUUUUCUUUUUAAGGUUUACUUUUUUUCAGUUCGAAUCCUCUGUAAUAUUUCUUGUAACAUUCUUGAUUUGGUAUAUUUUAUUAAUAAAACUUACCAAAUAAAAGAUAAACUUAAGAGGAAAAUGUAAACUUUGAAGGGAAAAACAUAUUAUAAAAGGAAAUAUUACAAAAACAAACGAUCUUGAGUGCCUUUUUCUCUUAAGAUUUAUCUUUUACUUGGUAAGUUUUAUUAAUAAGUAUACCAAAUUAAGAAUGUUACCGGAAAUGUUACAAGACAAUGAAAUAGUGAAAUGUACUUAAAUUACAUUGCAUAUUGUAAGGGAAA
Secondary structure of stem-loop sequence To make high resolution picture for your own, please download the .ps file.

Mature sequence[cro-novel-7]

AUCCUCUGUAAUAUUUCUUGUAAC

Stem-loop sequence[cro-NOVEL-7]

CUUCUUUUGUAAUAUGUUUUUCUUUUUAAGGUUUACUUUUUUUCAGUUCGAAUCCUCUGUAAUAUUUCUUGUAACAUUCUUGAUUUGGUAUAUUUUAUUAAUAAAACUUACCAAAUAAAAGAUAAACUUAAGAGGAAAAUGUAAACUUUGAAGGGAAAAACAUAUUAUAAAAGGAAAUAUUACAAAAACAAACGAUCUUGAGUGCCUUUUUCUCUUAAGAUUUAUCUUUUACUUGGUAAGUUUUAUUAAUAAGUAUACCAAAUUAAGAAUGUUACCGGAAAUGUUACAAGACAAUGAAAUAGUGAAAUGUACUUAAAUUACAUUGCAUAUUGUAAGGGAAA

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.

miRNA target information

Target gene

Alignment

Annotation

Expection

Method

CRO_T007160

ncRNA:	24	CAAUGUUCUUUAUAAUGUCUCCUA	1
		\|\|\|\|\|\|\|*\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:	8821	GUUACAAAAAAUGUUACAGAGGAU	8844

10-formyltetrahydrofolate synthetase

2.5

psRNATarget[Detail]

CRO_T009769

ncRNA:	24	CAAUGUUCUUUAUAAUGUCUCCUA	1
		\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|
targets:	2322	GUUACGAGAAAUAUUACAGAGAAU	2345

CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily pr

2.5

psRNATarget[Detail]

CRO_T020935

ncRNA:	24	CAAUGUUCUUUAUAAUGUCUCCUA	1
		\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	12150	GUUAAAGGAAAUAUUACAUAGGAU	12173

golgin candidate

2.5

psRNATarget[Detail]

CRO_T031150

ncRNA:	24	CAAUGUUCUUUAUAAUGUCUCCUA	1
		\|\|\|\|\|\|**\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	2403	GUUACAUAAAAUAUUACAGAGGAU	2426

Nodulin MtN3 family protein

psRNATarget[Detail]

CRO_T033107

ncRNA:	24	CAAUGUUCUUUAUAAUGUCUCCUA	1
		\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:	6389	GUUAAAAGAAAUAUUACAGAGGAU	6412

aminophospholipid ATPase

psRNATarget[Detail]

Expression pattern

Tissue	Treat	FPKM value
seedling	control	16.29
seedling	MeJA treatment 1h	12.05
seedling	MeJA treatment 8h	16.52
seedling	MeJA treatment 24h	25.85