miRNA detailed information

miRNA detail image

detail
more details in UCSC

Location informaition

TypeIDScaffoldStartEndStrand
maturecro-novel-8scaffold_304516957035680-
precursorcro-NOVEL-8scaffold_304516959005631-

Sequence and structure information

Mature sequence[cro-novel-8]

AGUGACUGUGCGUUAUCUUGUUUA

Stem-loop sequence[cro-NOVEL-8]

UUUUCAAAAAAAAGUACUAAAUAGGUUUUUUUUUUUUUUUUAAAUCCUGAAGAGGUCAUAACGCACAGUCAUUGUGCGUUAUCAAAUGAGAUAAUGCACAAUGGUUGUGUUAUAACUAAUCAUGGGCUUAAUCCGCGUUAAGUGCUGAGGUGGAUAAUAACGCACAACCAUUGUGCAUUAUCUUGAUGAUAACGCACAGUGACUGUGCGUUAUCUUGUUUAUGUUGAUUAGGAAAAAAUAAUUUUUGUAAGUAUUUGGAAAACUUGAAAC

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.


miRNA target information

Target geneAlignmentAnnotationExpectionMethod
CRO_T008020
 ncRNA:24AUUUGUUCUAUUGCGUGUCAGUGA1
   |***||=*|||||||||||||||| 
 targets:10306UCCUCAGAAUAACGCACAGUCACU10329
AGAMOUS-like2psRNATarget[Detail]
CRO_T014625
 ncRNA:24AUUUGUUCUAUUGCGUGUCAGUGA1
   ***||**||||||||||||||||| 
 targets:56AUCACCUGAUAACGCACAGUCACU79
hypothetical protein2psRNATarget[Detail]
CRO_T021490
 ncRNA:24AUUUGUUCUAUUGCGUGUCAGUGA1
   *|||=*||||||||||||||||=| 
 targets:204AAAAUUAGAUAACGCACAGUCAUU227
hypothetical protein2.5psRNATarget[Detail]
CRO_T029814
 ncRNA:24AUUUGUUCUAUUGCGUGUCAGUGA1
   ***||**||||||||||||||||| 
 targets:3540AUCACCUGAUAACGCACAGUCACU3563
hypothetical protein2psRNATarget[Detail]
CRO_T033063
 ncRNA:24AU-UUGUUCUAUUGCGUGUCAGUGA1
   ||-||||*||||||*|||||||||| 
 targets:162UAUAACAUGAUAACACACAGUCACU186
hypothetical protein2.5psRNATarget[Detail]

Expression pattern

TissueTreatFPKM value
seedlingcontrol52.67
seedlingMeJA treatment 1h28.64
seedlingMeJA treatment 8h39.35
seedlingMeJA treatment 24h4.25
TOP

Maintained by Jiajie She & Hengyu Yan in Zhen Su's Lab | China Agricultural University
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