miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|
| mature | cro-novel-84 | scaffold_3057396 | 7593 | 7570 | - |
| precursor | cro-NOVEL-84 | scaffold_3057396 | 7602 | 7451 | - |
Sequence and structure information
Mature sequence[cro-novel-84] AUCUUCUGGUACACUUUCUUUGGA |
Stem-loop sequence[cro-NOVEL-84] CUCUAAUGUAUCUUCUGGUACACUUUCUUUGGAACACUUCUUUUAUAGUAUUUUUAUAAAUGAACUUUAUAAAAUAGAAGAUAAAACCUAAGUAAAAAAAGAAGUAUAGAUGGAGAAAUGUAGCAAGAAGUGUAUUAUAAGAUGUAUUAGAU |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method |
|---|
| CRO_T007735 | | | ncRNA: | 24 | AGGUUUCUUUCACAUGGUCUUCUA | 1 | | | | | *=*|||||||*|||*||||||||| | | | | targets: | 3445 | AUAAAAGAAAAUGUUCCAGAAGAU | 3468 |
| DNA/RNA polymerases superfamily protein | 2.5 | psRNATarget[Detail] | | CRO_T009422 | | | ncRNA: | 24 | AGGUUUCUUUCACAUGGUCUUCUA | 1 | | | | | *|=||||=||||||||=||||||| | | | | targets: | 5734 | ACUAAAGGAAGUGUACUAGAAGAU | 5757 |
| Glycosyl hydrolases family 31 protein | 2.5 | psRNATarget[Detail] | | CRO_T011351 | | | ncRNA: | 24 | AGGUUUCUUUCACAUGGUCUUCUA | 1 | | | | | *=***|||=||||||||||||||| | | | | targets: | 8704 | GUACUAGAGAGUGUACCAGAAGAU | 8727 |
| starch branching enzyme 2.2 | 1 | psRNATarget[Detail] | | CRO_T018627 | | | ncRNA: | 24 | AGGUUUCUUUCA-CAUGGUCUUCUA | 1 | | | | | *|||=|||||||-|||||||||||| | | | | targets: | 4432 | ACCAGAGAAAGUAGUACCAGAAGAU | 4456 |
| N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | 3 | psRNATarget[Detail] | | CRO_T021774 | | | ncRNA: | 24 | AGGUUUCUUUCACAUGGUCUUCUA | 1 | | | | | *=***|||=|||||||=||||||| | | | | targets: | 3289 | GUAUUAGAGAGUGUACUAGAAGAU | 3312 |
| protein phosphatase 2A subunit A2 | 2.5 | psRNATarget[Detail] | | CRO_T022158 | | | ncRNA: | 24 | AGGUUUCUUUCACAUGGUCUUCUA | 1 | | | | | |*==|||*|||||||||||||*|| | | | | targets: | 538 | UAUGAAGUAAGUGUACCAGAACAU | 561 |
| Protein of unknown function (DUF581) | 2.5 | psRNATarget[Detail] | | CRO_T033209 | | | ncRNA: | 24 | AGGUUUCUUUCACAUGGUCUUCUA | 1 | | | | | *=***|||=||||||=|||||||| | | | | targets: | 1980 | GUAUUAGAGAGUGUAUCAGAAGAU | 2003 |
| conserved hypothetical protein | 2.5 | psRNATarget[Detail] |
|
Expression pattern
| Tissue | Treat | FPKM value |
|---|
| seedling | control | 3.1 |
| seedling | MeJA treatment 1h | 3.13 |
| seedling | MeJA treatment 8h | 3.2 |
| seedling | MeJA treatment 24h | 4.07 |