miRNA detailed information

miRNA detail image

detail
more details in UCSC

Location informaition

TypeIDScaffoldStartEndStrand
maturecro-novel-99scaffold_30228691091910942+
precursorcro-NOVEL-99scaffold_30228691075810950+

Sequence and structure information

Mature sequence[cro-novel-99]

AGAAUGUAUUAGACGAUCUUGAGU

Stem-loop sequence[cro-NOVEL-99]

AUAUAAUUACAAAAAUUAUUUAAUUACACUCUCUAGUAUACACUAUUUAUAGUAAUUUUAUUAAUAAAAUCGUAUAGAAUAAAAGAUAAAUCCUAAACUUUAAAAAAUAAAACCCUAAGAAAAAAUAAUUAAUCAAAUAAAUGUACUAAAUAGUGUACUAGAGAAUGUAUUAGACGAUCUUGAGUGCAUAUAU

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.


miRNA target information

Target geneAlignmentAnnotationExpectionMethod
CRO_T001102
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   |=||||*|||||||||||||||=| 
 targets:2602AUUCAAAAUCGUCUAAUACAUUUU2625
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein2.5psRNATarget[Detail]
CRO_T002573
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   |||=|=*||||||||||||||||* 
 targets:4942ACUUAGAAUCGUCUAAUACAUUCC4965
alpha-glucan phosphorylase3psRNATarget[Detail]
CRO_T003368
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   ||||*|*|||||||||||||*||| 
 targets:11736ACUCCAAAUCGUCUAAUACACUCU11759
zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding2.5psRNATarget[Detail]
CRO_T005619
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   |||||||||=||||||||||*||| 
 targets:3911ACUCAAGAUUGUCUAAUACACUCU3934
Ppx/GppA phosphatase family domain containing protein2.5psRNATarget[Detail]
CRO_T006563
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   |=|||=*|||*||||||||||||| 
 targets:2465AUUCAGAAUCAUCUAAUACAUUCU2488
Copper amine oxidase family protein3psRNATarget[Detail]
CRO_T006787
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   |||||||||=||||||||||*||| 
 targets:5315ACUCAAGAUUGUCUAAUACACUCU5338
Protein of unknown function, DUF6422.5psRNATarget[Detail]
CRO_T007760
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   =*||=*||||||||||||||||=| 
 targets:569GAUCGUGAUCGUCUAAUACAUUUU592
Pectin lyase-like superfamily protein2.5psRNATarget[Detail]
CRO_T011565
 ncRNA:24UG--AGUUCUAGCAGAUUAUGUAAGA1
   ||--||==|||||||||*|||||||| 
 targets:5721ACGGUCGGGAUCGUCUAUUACAUUCU5746
Disease resistance protein (CC-NBS-LRR class) family2.5psRNATarget[Detail]
CRO_T012842
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   |||||||||=||||||||||||=| 
 targets:1457ACUCAAGAUUGUCUAAUACAUUUU1480
SNARE-like superfamily protein2.5psRNATarget[Detail]
CRO_T014528
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   |||||||||=||=||||||||||| 
 targets:5014ACUCAAGAUUGUUUAAUACAUUCU5037
DEA(D/H)-box RNA helicase family protein2.5psRNATarget[Detail]
CRO_T017760
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   |||--|||||*|||||||||||=| 
 targets:2738ACU--AGAUCUUCUAAUACAUUUU2759
methyl-CPG-binding domain2.5psRNATarget[Detail]
CRO_T021121
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   =*|||||||||||||||||||*|* 
 targets:3473GAUCAAGAUCGUCUAAUACAUCCA3496
Peroxidase superfamily protein2.5psRNATarget[Detail]
CRO_T026114
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   |**|||||||||||||||||||=| 
 targets:2893AGCCAAGAUCGUCUAAUACAUUUU2916
ATP binding cassette subfamily B11.5psRNATarget[Detail]
CRO_T026159
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   |=|=|=*|||*||||||||||||| 
 targets:894AUUUAGAAUCUUCUAAUACAUUCU917
glycosyl hydrolase 9A13psRNATarget[Detail]
CRO_T026234
 ncRNA:24UGAGUUCUAGCAGAUUAUGUAAGA1
   ||||||*||||||||||||||||* 
 targets:5264ACUCAAAAUCGUCUAAUACAUUCA5287
ferric reduction oxidase2psRNATarget[Detail]

Expression pattern

TissueTreatFPKM value
seedlingcontrol195.45
seedlingMeJA treatment 1h145.03
seedlingMeJA treatment 8h155.33
seedlingMeJA treatment 24h157.71
TOP

Maintained by Jiajie She & Hengyu Yan in Zhen Su's Lab | China Agricultural University
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