CFinderADM000367's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| xylan biosynthesis | 2.47E-05 | plantCyc |
| clathrin-coated vesicle | 5.19E-05 | GO:0030136 |
| clathrin binding | 6.58E-05 | GO:0030276 |
| 1-phosphatidylinositol binding | 6.58E-05 | GO:0005545 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000123895 | cazy family |
| clathrin coat assembly | 0.000131546 | GO:0048268 |
| DNA-directed DNA polymerase activity | 0.000268346 | GO:0003887 |
| cellulose synthase (UDP-forming) activity | 0.000295822 | GO:0016760 |
| DNA biosynthetic process | 0.000473831 | GO:0071897 |
| cellulose biosynthetic process | 0.000756458 | GO:0030244 |
| translational initiation | 0.000962661 | GO:0006413 |
| translation initiation factor activity | 0.001781816 | GO:0003743 |
| RNA transport | 0.002712166 | KEGG pathway |
| cell wall organization | 0.004034884 | GO:0071555 |
| transcription, DNA-templated | 0.017172876 | GO:0006351 |
| DNA binding | 0.039584461 | GO:0003677 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001510 | AT1G14910 (9.00E-145) | ENTH/ANTH/VHS superfamily protein |
| CRO_T008208 | AT1G02730 (0) | ATCSLD5|cellulose synthase-like D5; CSLD5|CELLULOSE SYNTHASE LIKE D5; SOS6|SALT OVERLY SENSITIVE 6 |
| CRO_T022411 | AT5G11300 (1.00E-19) | CYC3B|mitotic-like cyclin 3B from Arabidopsis; CYCA2; 2|CYCLIN A2; 2 |
| CRO_T029934 | AT4G27130 (3.00E-55) | Translation initiation factor SUI1 family protein |
| CRO_T031941 | AT5G64420 (0) | DNA polymerase V family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001098 | sphingolipid delta-4 desaturase activity sphingolipid biosynthetic process Phagosome Sphingolipid metabolism xylan biosynthesis sphingolipid biosynthesis (plants) formation of glycosidic bonds, GlycosylTransferases: GTnc microtubule-based process structural constituent of cytoskeleton cellulose synthase (UDP-forming) activity cellulose biosynthetic process GTPase activity microtubule cell wall organization GTP binding | details |
| CFinderADM002202 | Endocrine resistance protein-arginine omega-N asymmetric methyltransferase activity histone-arginine N-methyltransferase activity auxin efflux transmembrane transporter activity histone arginine methylation peptidyl-arginine methylation, to asymmetrical-dimethyl arginine auxin homeostasis auxin efflux auxin polar transport protein polyubiquitination auxin-activated signaling pathway pollen development translational initiation protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process translation initiation factor activity ubiquitin protein ligase activity RNA transport Ubiquitin_Proteasome_system, E3: RING transmembrane transport endoplasmic reticulum regulation of transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |