CFinderADM001197's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cinnamyl-alcohol dehydrogenase activity | 5.25E-05 | GO:0045551 |
| sinapyl alcohol dehydrogenase activity | 5.25E-05 | GO:0052747 |
| thylakoid membrane organization | 7.61E-05 | GO:0010027 |
| geraniol and geranial biosynthesis | 0.000197047 | plantCyc |
| L-tryptophan biosynthesis | 0.000201978 | plantCyc |
| lignin biosynthetic process | 0.000233553 | GO:0009809 |
| Phenylpropanoid biosynthesis | 0.000894041 | KEGG pathway |
| chloroplast thylakoid membrane | 0.008845774 | GO:0009535 |
| zinc ion binding | 0.04477964 | GO:0008270 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000927 | AT1G64430 (4.00E-161) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T007214 | AT4G31115 (4.00E-39) | Protein of unknown function (DUF1997) |
| CRO_T011702 | AT3G19450 (9.00E-115) | CAD4|CINNAMYL ALCOHOL DEHYDROGENASE 4 |
| CRO_T023270 | AT3G53920 (4.00E-99) | SIG3|SIGMA FACTOR 3; SIGC|RNApolymerase sigma-subunit C |
| CRO_T028185 | AT1G65260 (1.00E-115) | PTAC4|plastid transcriptionally active 4; VIPP1|VESICLE-INDUCING PROTEIN IN PLASTIDS 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001198 | zeaxanthin, antheraxanthin and violaxanthin interconversion antioxidant activity magnesium chelatase activity sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity geraniol and geranial biosynthesis organic phosphonate transmembrane-transporting ATPase activity organophosphate ester transport organic phosphonate transport lignin biosynthetic process Phenylpropanoid biosynthesis cellular oxidant detoxification oxidation-reduction process transmembrane transport oxidoreductase activity | details |
| CFinderADM001247 | methylthiotransferase activity tRNA methylthiolation regulation of protein kinase activity cell morphogenesis protein kinase regulator activity sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity geraniol and geranial biosynthesis lignin biosynthetic process peptidyl-prolyl cis-trans isomerase activity 4 iron, 4 sulfur cluster binding Phenylpropanoid biosynthesis cellular process transmembrane transport translation structural constituent of ribosome | details |
| CFinderADM002230 | ubiquinone-6 biosynthetic process oxidation-reduction process ascorbate glutathione cycle geraniol and geranial biosynthesis cinnamyl-alcohol dehydrogenase activity sinapyl alcohol dehydrogenase activity NADH dehydrogenase activity lignin biosynthetic process plastoglobule cell thylakoid Phenylpropanoid biosynthesis protein disulfide oxidoreductase activity cell redox homeostasis response to oxidative stress electron carrier activity transferase activity | details |
Expression profiles
 Show details about module gene expression profiling |