CFinderADM001485's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| proteasome regulatory particle assembly | 1.38E-05 | GO:0070682 |
| DNA recombinase assembly | 2.42E-05 | GO:0000730 |
| mitotic recombination | 3.03E-05 | GO:0006312 |
| strand invasion | 3.03E-05 | GO:0042148 |
| response to ionizing radiation | 3.03E-05 | GO:0010212 |
| four-way junction DNA binding | 5.36E-05 | GO:0000400 |
| endodeoxyribonuclease activity | 5.36E-05 | GO:0004520 |
| recombinase activity | 5.36E-05 | GO:0000150 |
| DNA-dependent ATPase activity | 9.37E-05 | GO:0008094 |
| single-stranded DNA binding | 0.000180449 | GO:0003697 |
| proteasome regulatory particle, base subcomplex | 0.000204625 | GO:0008540 |
| double-stranded DNA binding | 0.00027603 | GO:0003690 |
| cytoplasm | 0.000360871 | GO:0005737 |
| Homologous recombination | 0.000485615 | KEGG pathway |
| nucleus | 0.001280307 | GO:0005634 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007449 | AT1G79050 (1.00E-135) | RECA1|homolog of bacterial RecA |
| CRO_T012749 | AT3G59480 (0.000000001) | pfkB-like carbohydrate kinase family protein |
| CRO_T019133 | AT5G52180 (9.00E-108) | LOCATED IN: endomembrane system |
| CRO_T023784 | AT5G57950 (1.00E-71) | 26S proteasome regulatory subunit, putative |
| CRO_T031620 | AT2G38000 (6.00E-149) | chaperone protein dnaJ-related |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000073 | Cytochrome_P450, Cytochrome P450: CYP709B methylthioribulose 1-phosphate dehydratase activity 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity phospholipid transporter activity acireductone synthase activity magnesium ion binding 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity S-methyl-5-thio-α-D-ribose 1-phosphate degradation ATP-binding cassette (ABC) transporter complex phospholipid transport Golgi vesicle budding L-methionine biosynthetic process from S-adenosylmethionine lagging strand elongation protein ADP-ribosylation DNA ligation involved in DNA repair phospholipid binding double-strand break repair via nonhomologous end joining NAD+ ADP-ribosyltransferase activity L-methionine biosynthetic process from methylthioadenosine phospholipid translocation DNA ligase (ATP) activity phospholipid-translocating ATPase activity nucleus chloroplast outer membrane Base excision repair chloroplast inner membrane Cysteine and methionine metabolism Transcription_related, Transcription factor: MYB 2-alkenal reductase [NAD(P)] activity dephosphorylation cytoplasm Golgi membrane oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity oxidation-reduction process trans-Golgi network vacuolar membrane Protein processing in endoplasmic reticulum endoplasmic reticulum Golgi apparatus ATP binding | details |
| CFinderADM000535 | acireductone synthase activity 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity methylthioribulose 1-phosphate dehydratase activity 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity sodium:proton antiporter activity potassium ion homeostasis L-methionine biosynthetic process from S-adenosylmethionine S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-methionine biosynthetic process from methylthioadenosine sodium ion transmembrane transport regulation of pH Cysteine and methionine metabolism response to salt stress hydrogen ion transmembrane transport magnesium ion binding dephosphorylation vacuolar membrane | details |
| CFinderADM001077 | Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM001457 | methylthioribulose 1-phosphate dehydratase activity 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity acireductone synthase activity cAMP-dependent protein kinase activity L-methionine biosynthetic process from S-adenosylmethionine S-methyl-5-thio-α-D-ribose 1-phosphate degradation Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase L-methionine biosynthetic process from methylthioadenosine cell surface receptor signaling pathway Cysteine and methionine metabolism dephosphorylation polysaccharide binding magnesium ion binding protein dimerization activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein phosphorylation | details |
| CFinderADM001594 | Cytochrome_P450, Cytochrome P450: CYP706A folate polyglutamylation II glutamate removal from folates gamma-glutamyl-peptidase activity tetrahydrofolylpolyglutamate metabolic process proteasome regulatory particle assembly Folate biosynthesis Viral carcinogenesis magnesium ion transport glutamine metabolic process magnesium ion transmembrane transport magnesium ion transmembrane transporter activity proteasome regulatory particle, base subcomplex secondary metabolite biosynthetic process oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen vacuole proteolysis iron ion binding heme binding hydrolase activity | details |
| CFinderADM002143 | cytoplasm nucleus DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity protein ADP-ribosylation lagging strand elongation double-strand break repair via nonhomologous end joining DNA ligation involved in DNA repair Glycosaminoglycan degradation Base excision repair | details |
Expression profiles
 Show details about module gene expression profiling |