CFinderADM001744's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 1.32E-05 | cazy family |
| glycoprotein 2-beta-D-xylosyltransferase activity | 2.86E-05 | GO:0050513 |
| monodehydroascorbate reductase (NADH) activity | 4.77E-05 | GO:0016656 |
| L-malate dehydrogenase activity | 0.000142754 | GO:0030060 |
| glyoxylate cycle | 0.000459081 | plantCyc |
| TCA cycle II (plants and fungi) | 0.000459081 | plantCyc |
| oxidation-reduction process | 0.000717682 | GO:0055114 |
| malate metabolic process | 0.00081168 | GO:0006108 |
| regulation of translational initiation | 0.001099955 | GO:0006446 |
| formation of translation preinitiation complex | 0.001099955 | GO:0001731 |
| integral component of membrane | 0.001134874 | GO:0016021 |
| stromule | 0.001134874 | GO:0010319 |
| gluconeogenesis I | 0.001291438 | plantCyc |
| eukaryotic 48S preinitiation complex | 0.001868066 | GO:0033290 |
| eukaryotic translation initiation factor 3 complex | 0.001868066 | GO:0005852 |
| eukaryotic 43S preinitiation complex | 0.001868066 | GO:0016282 |
| Ascorbate and aldarate metabolism | 0.00210151 | KEGG pathway |
| translation initiation factor activity | 0.005753837 | GO:0003743 |
| endoplasmic reticulum membrane | 0.01844036 | GO:0005789 |
| vacuolar membrane | 0.01844036 | GO:0005774 |
| RNA transport | 0.025734358 | KEGG pathway |
| transport | 0.027626704 | GO:0006810 |
| Golgi apparatus | 0.029270036 | GO:0005794 |
| Carbon metabolism | 0.03117472 | KEGG pathway |
| Protein processing in endoplasmic reticulum | 0.03117472 | KEGG pathway |
| carbohydrate metabolic process | 0.032191183 | GO:0005975 |
| plasmodesma | 0.035110753 | GO:0009506 |
| translation | 0.038389555 | GO:0006412 |
| chloroplast stroma | 0.044142762 | GO:0009570 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005134 | AT3G53940 (0.0000009) | Mitochondrial substrate carrier family protein |
| CRO_T006249 | AT1G60690 (6.00E-144) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T006703 | AT4G20980 (0) | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) |
| CRO_T011552 | AT5G14030 (1.00E-58) | translocon-associated protein beta (TRAPB) family protein |
| CRO_T021073 | AT5G55500 (0) | ATXYLT|BETA-1,2-XYLOSYLTRANSFERASE |
| CRO_T025601 | AT3G09570 (0) | Lung seven transmembrane receptor family protein |
| CRO_T032004 | AT3G47520 (4.00E-163) | MDH|malate dehydrogenase; pNAD-MDH|plastidic NAD-dependent malate dehydrogenase |
| CRO_T032987 | AT1G63940 (0) | MDAR6|monodehydroascorbate reductase 6 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000779 | IMP dehydrogenase activity peptide metabolic process GMP biosynthetic process Ubiquitin_Proteasome_system, DUB: JAMM guanosine ribonucleotides de novo biosynthesis cullin deneddylation adenosine nucleotides degradation I COP9 signalosome protein disulfide isomerase activity formation of translation preinitiation complex regulation of translational initiation eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex cell metalloendopeptidase activity metal ion binding translation initiation factor activity cell redox homeostasis Purine metabolism RNA transport Protein processing in endoplasmic reticulum proteolysis | details |
| CFinderADM001172 | glycoprotein 2-beta-D-xylosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc oligosaccharyltransferase complex protein N-linked glycosylation regulation of translational initiation formation of translation preinitiation complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex translation initiation factor activity N-Glycan biosynthesis RNA transport | details |
| CFinderADM001556 | Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) L-malate dehydrogenase activity glyoxylate cycle TCA cycle II (plants and fungi) cell surface receptor signaling pathway malate metabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 gluconeogenesis I Carbon metabolism carbohydrate metabolic process RNA binding protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001640 | Hedgehog signaling pathway L-malate dehydrogenase activity Transcription_related, Transcription regulator: TRAF glyoxylate cycle TCA cycle II (plants and fungi) gluconeogenesis I malate metabolic process Ubiquitin_Proteasome_system, E3 adaptor: BTB chloroplast organization oxidation-reduction process Carbon metabolism transport carbohydrate metabolic process chloroplast envelope transferase activity translation oxidoreductase activity structural constituent of ribosome | details |
| CFinderADM001907 | fumarate hydratase activity tricarboxylic acid cycle enzyme complex fumarate metabolic process mitochondrial respiratory chain complex III protein tetramerization mitochondrial electron transport, ubiquinol to cytochrome c TCA cycle II (plants and fungi) aerobic respiration malate metabolic process protein processing aerobic respiration I (cytochrome c) tricarboxylic acid cycle Peroxisome metalloendopeptidase activity transport Carbon metabolism translation structural constituent of ribosome integral component of membrane mitochondrion | details |
Expression profiles
 Show details about module gene expression profiling |