CFinderADM001809's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ribosome | 1.59E-05 | KEGG pathway |
| translation | 3.14E-05 | GO:0006412 |
| snRNA stem-loop binding | 3.61E-05 | GO:0035614 |
| U1 snRNA binding | 3.61E-05 | GO:0030619 |
| structural constituent of ribosome | 3.61E-05 | GO:0003735 |
| nucleotide binding | 5.32E-05 | GO:0000166 |
| U1 snRNP | 0.000151703 | GO:0005685 |
| viral nucleocapsid | 0.000681338 | GO:0019013 |
| mRNA splicing, via spliceosome | 0.000749439 | GO:0000398 |
| translational initiation | 0.000749439 | GO:0006413 |
| lipid metabolic process | 0.001267736 | GO:0006629 |
| rRNA binding | 0.002211802 | GO:0019843 |
| translation initiation factor activity | 0.002211802 | GO:0003743 |
| cytosolic large ribosomal subunit | 0.002767898 | GO:0022625 |
| RNA transport | 0.003994007 | KEGG pathway |
| Spliceosome | 0.003994007 | KEGG pathway |
| hydrolase activity | 0.020397737 | GO:0016787 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001232 | AT3G16080 (6.00E-34) | Zinc-binding ribosomal protein family protein |
| CRO_T014397 | AT5G28060 (6.00E-61) | Ribosomal protein S24e family protein |
| CRO_T024110 | AT1G77840 (7.00E-135) | Translation initiation factor IF2/IF5 |
| CRO_T029400 | AT2G42450 (2.00E-117) | alpha/beta-Hydrolases superfamily protein |
| CRO_T031540 | AT1G06960 (4.00E-20) | RNA-binding (RRM/RBD/RNP motifs) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000789 | lipid metabolic process cytochrome-b5 reductase activity, acting on NAD(P)H hydrolase activity triacylglycerol degradation small GTPase mediated signal transduction Endocytosis endosome GTP binding heme binding | details |
| CFinderADM000997 | Ribosome hydroxymethylglutaryl-CoA reductase (NADPH) activity ferric iron binding ferroxidase activity mevalonate pathway I structural constituent of ribosome coenzyme A metabolic process translation response to hydrogen peroxide isoprenoid biosynthetic process aerobic respiration iron-sulfur cluster assembly Porphyrin and chlorophyll metabolism Terpenoid backbone biosynthesis NADP binding rRNA binding cytosolic large ribosomal subunit endoplasmic reticulum membrane nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |