CFinderADM001944's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| plastid chromosome | 5.95E-05 | GO:0009508 |
| nucleic acid binding | 7.64E-05 | GO:0003676 |
| Transcription_related, Transcription regulator: SET | 0.000147759 | TF family |
| substrate-specific transmembrane transporter activity | 0.000223346 | GO:0022891 |
| 3'-5' exonuclease activity | 0.000268346 | GO:0008408 |
| RNA secondary structure unwinding | 0.00083475 | GO:0010501 |
| rRNA processing | 0.00083475 | GO:0006364 |
| carbohydrate transport | 0.00083475 | GO:0008643 |
| nucleic acid phosphodiester bond hydrolysis | 0.001326675 | GO:0090305 |
| ATP-dependent RNA helicase activity | 0.001460826 | GO:0004004 |
| 2-alkenal reductase [NAD(P)] activity | 0.001692709 | GO:0032440 |
| transmembrane transport | 0.022191864 | GO:0055085 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T017886 | - | - |
| CRO_T019954 | AT1G67300 (3.00E-175) | Major facilitator superfamily protein |
| CRO_T023830 | AT1G31010 (9.00E-52) | OSB4|organellar single-stranded DNA binding protein 4 |
| CRO_T023831 | AT3G09720 (0) | RH57|RNA helicase 57 |
| CRO_T027299 | AT1G56310 (2.00E-16) | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000817 | dGTP catabolic process dGTPase activity mannitol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity sinapyl alcohol dehydrogenase activity 3'-5' exonuclease activity nucleic acid phosphodiester bond hydrolysis Phenylpropanoid biosynthesis nucleic acid binding hydrolase activity | details |
| CFinderADM001542 | endosperm development determination of bilateral symmetry polar nucleus fusion ribosomal large subunit biogenesis rRNA processing RNA secondary structure unwinding embryo development ending in seed dormancy ATP-dependent RNA helicase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD nucleic acid binding | details |
| CFinderADM001775 | positive regulation of circadian rhythm response to far red light Circadian rhythm peptidyl-lysine monomethylation red, far-red light phototransduction clathrin adaptor complex substrate-specific transmembrane transporter activity protein-lysine N-methyltransferase activity ATP-dependent helicase activity DNA recombination Transcription_related, Transcription regulator: SET Lysosome carbohydrate transport positive regulation of transcription, DNA-templated RNA degradation Transcription_related, Transcription factor: FAR1 vesicle-mediated transport 2-alkenal reductase [NAD(P)] activity intracellular protein transport transmembrane transport transcription factor activity, sequence-specific DNA binding nucleic acid binding | details |
| CFinderADM001879 | putrescine biosynthesis II Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX arginine decarboxylase activity arginine catabolic process cellular protein localization spermidine biosynthetic process Arginine and proline metabolism Insulin signaling pathway 3'-5' exonuclease activity cellular transition metal ion homeostasis ribosome biogenesis metal ion transport exocytosis response to salt stress exocyst transition metal ion binding nucleic acid phosphodiester bond hydrolysis signal transduction GTPase activity GTP binding protein kinase activity nucleic acid binding | details |
| CFinderADM002103 | Cul3-RING ubiquitin ligase complex response to red light Transcription_related, Transcription factor: SBP rRNA processing RNA secondary structure unwinding Ubiquitin_Proteasome_system, E3 adaptor: BTB ATP-dependent RNA helicase activity protein ubiquitination ubiquitin-protein transferase activity nucleic acid binding | details |
| CFinderADM002194 | calcium:proton antiporter activity anther dehiscence pollen exine formation plastid chromosome calcium ion transmembrane transport pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion hydrolase activity integral component of membrane | details |
| CFinderADM002285 | ErbB signaling pathway heterochromatin assembly chromatin silencing complex chromatin transcription regulatory region sequence-specific DNA binding Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Transcription_related, Transcription regulator: PHD chromatin silencing RNA secondary structure unwinding rRNA processing protein autophosphorylation chromatin binding cytosolic large ribosomal subunit ATP-dependent RNA helicase activity ATP binding Ribosome translation nucleic acid binding structural constituent of ribosome protein serine/threonine kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |