TissueCFM000822's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cysteinyl-tRNA aminoacylation | 0.00260619 | GO:0006423 |
| tRNA wobble position uridine thiolation | 0.00260619 | GO:0002143 |
| regulation of programmed cell death | 0.00260619 | GO:0043067 |
| cristae formation | 0.00260619 | GO:0042407 |
| sulfurtransferase activity | 0.002954864 | GO:0016783 |
| cysteine-tRNA ligase activity | 0.002954864 | GO:0004817 |
| L-alanine biosynthesis III | 0.003722304 | plantCyc |
| molybdenum cofactor biosynthesis | 0.004781931 | plantCyc |
| polar nucleus fusion | 0.006251161 | GO:0010197 |
| Aminoacyl-tRNA biosynthesis | 0.011296492 | KEGG pathway |
| methyltransferase activity | 0.047443232 | GO:0008168 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T014917 | - | - |
| CRO_T020811 | AT1G79310 (1.00E-117) | AtMC7|metacaspase 7; AtMCP2a|metacaspase 2a |
| CRO_T022914 | AT1G51310 (3.00E-178) | transferases; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases |
| CRO_T025351 | AT2G01190 (2.00E-91) | PDE331|PIGMENT DEFECTIVE 331 |
| CRO_T026189 | - | - |
| CRO_T029176 | AT3G19810 (1.00E-79) | Protein of unknown function (DUF177) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000093 | Ubiquitin_Proteasome_system, DUB: OTU Transcription_related, Transcription factor: GRAS | details |
| TissueCFM000519 | xylan biosynthetic process Transcription_related, Transcription factor: Orphans methyltransferase activity thylakoid methylation | details |
| TissueCFM000563 | 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) photosystem II Peroxisome Ubiquinone and other terpenoid-quinone biosynthesis iron-sulfur cluster assembly Photosynthesis iron-sulfur cluster binding | details |
| TissueCFM000564 | ribosomal subunit cinnamoyl-CoA reductase activity Phenylpropanoid biosynthesis chloroplast part chloroplast thylakoid coenzyme binding | details |
| TissueCFM000717 | Transcription_related, Transcription factor: WRKY lipoate biosynthesis and incorporation I Lipoic acid metabolism Tropane, piperidine and pyridine alkaloid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc polyamine transport microtubule severing protein lipoylation glycolipid metabolic process lipoate biosynthetic process periplasmic space Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase polyamine binding lipoate synthase activity glucosyltransferase activity | details |
| TissueCFM001072 | growth RNA modification chloroplast organization Protein processing in endoplasmic reticulum protein transport chloroplast part | details |
| TissueCFM001219 | methyltransferase activity sulfurtransferase activity tRNA wobble position uridine thiolation wobble position cytosine ribose methylation wobble position uridine ribose methylation alditol:NADP+ 1-oxidoreductase activity L-alanine biosynthesis III molybdenum cofactor biosynthesis photosynthesis light reactions thylakoid lumen extrinsic component of membrane photosystem II oxygen evolving complex Protein processing in endoplasmic reticulum Photosynthesis | details |
| TissueCFM001263 | 5-deoxystrigol biosynthesis sulfur compound metabolic process purine ribonucleotide metabolic process adenylylsulfatase activity drug transmembrane transport | details |
| TissueCFM001674 | formation of glycosidic bonds, GlycosylTransferases: GTnc γ-glutamyl cycle sphingomyelin phosphodiesterase D activity potassium ion transmembrane transport acetylglucosaminyltransferase activity potassium ion transmembrane transporter activity integral component of membrane | details |
| TissueCFM001681 | lutein biosynthesis Cytochrome_P450, Cytochrome P450: CYP97C zeinoxanthin epsilon hydroxylase activity carotenoid biosynthetic process Carotenoid biosynthesis Transcription_related, Transcription factor: bHLH metalloendopeptidase activity FMN binding | details |
| TissueCFM001714 | methyltransferase activity wobble position cytosine ribose methylation wobble position uridine ribose methylation tRNA wobble position uridine thiolation sulfurtransferase activity alditol:NADP+ 1-oxidoreductase activity formation of glycosidic bonds, GlycosylTransferases: GTnc L-alanine biosynthesis III molybdenum cofactor biosynthesis photosynthesis light reactions xylogalacturonan biosynthesis photosystem II oxygen evolving complex extrinsic component of membrane thylakoid lumen transferase activity, transferring acyl groups Photosynthesis | details |
| TissueCFM001823 | fructose 1,6-bisphosphate 1-phosphatase activity Transcription_related, Transcription factor: NAC Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) sucrose biosynthesis I (from photosynthesis) very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism dephosphorylation | details |
| TissueCFM001842 | response to stress Transcription_related, Transcription factor: NAC Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |