TissueCFM000947's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| inosine-5'-phosphate biosynthesis II | 0.001240768 | plantCyc |
| adenine biosynthetic process | 0.005642055 | GO:0046084 |
| isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.005642055 | GO:0019288 |
| maltose metabolic process | 0.005642055 | GO:0000023 |
| isopentenyl diphosphate biosynthetic process, mevalonate pathway | 0.005642055 | GO:0019287 |
| alpha-1,4-glucosidase activity | 0.007353144 | GO:0004558 |
| phosphoribosylaminoimidazole carboxylase activity | 0.007353144 | GO:0004638 |
| poly(G) binding | 0.007353144 | GO:0034046 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.007353144 | GO:0004639 |
| maltose alpha-glucosidase activity | 0.007353144 | GO:0032450 |
| DNA topoisomerase activity | 0.007353144 | GO:0003916 |
| 'de novo' IMP biosynthetic process | 0.009023953 | GO:0006189 |
| root development | 0.01851227 | GO:0048364 |
| translational elongation | 0.01851227 | GO:0006414 |
| regulation of catalytic activity | 0.01851227 | GO:0050790 |
| sterol metabolic process | 0.01851227 | GO:0016125 |
| translation elongation factor activity | 0.044021179 | GO:0003746 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001965 | AT1G06220 (0) | CLO|CLOTHO; GFA1|GAMETOPHYTE FACTOR 1; MEE5|MATERNAL EFFECT EMBRYO ARREST 5 |
| CRO_T003902 | AT4G31210 (1.00E-49) | DNA topoisomerase, type IA, core |
| CRO_T007069 | AT4G17720 (4.00E-85) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T019324 | AT3G12770 (5.00E-127) | MEF22|mitochondrial editing factor 22 |
| CRO_T025832 | AT2G37690 (0) | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative |
| CRO_T033335 | AT5G63840 (3.00E-111) | PSL5|PRIORITY IN SWEET LIFE 5; RSW3|RADIAL SWELLING 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000948 | inosine-5'-phosphate biosynthesis II RNA transport phosphoribosylaminoimidazolesuccinocarboxamide synthase activity maltose alpha-glucosidase activity alpha-1,4-glucosidase activity poly(G) binding phosphoribosylaminoimidazole carboxylase activity isopentenyl diphosphate biosynthetic process, mevalonate pathway adenine biosynthetic process maltose metabolic process isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RNA binding 'de novo' IMP biosynthetic process regulation of catalytic activity root development formation of translation preinitiation complex sterol metabolic process translational elongation regulation of translational initiation rRNA processing N-Glycan biosynthesis eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex proteasome complex eukaryotic 48S preinitiation complex | details |
| TissueCFM001167 | histone H3-K4 methylation histone H3-K36 methylation negative regulation of flower development Cul4-RING E3 ubiquitin ligase complex RNA degradation | details |
| TissueCFM001265 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Transcription_related, Transcription regulator: mTERF plasma membrane respiratory chain complex I protein kinase CK2 complex aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation regulation of protein kinase activity stem cell fate determination mitochondrial electron transport, NADH to ubiquinone cellular calcium ion homeostasis meristem maintenance pollen maturation cation transmembrane transport nucleic acid metabolic process cellular response to phosphate starvation pollen germination nucleobase-containing compound metabolic process cellular macromolecule metabolic process mitochondrial respiratory chain complex I hydrogen-translocating pyrophosphatase activity inorganic diphosphatase activity protein kinase regulator activity cation-transporting ATPase activity | details |
| TissueCFM001319 | nucleic acid binding Ubiquitin_Proteasome_system, E3 adaptor: DDB1 5'-3' exoribonuclease activity RIG-I-like receptor signaling pathway stem cell fate determination meristem maintenance cellular calcium ion homeostasis pollen maturation cellular response to phosphate starvation RNA phosphodiester bond hydrolysis, exonucleolytic pollen germination cation transmembrane transport cation-transporting ATPase activity RNA secondary structure unwinding mRNA splicing, via spliceosome Ribosome biogenesis in eukaryotes | details |
| TissueCFM001462 | L-leucine degradation I microtubule plus-end binding hydroxymethylglutaryl-CoA lyase activity transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery protein targeting to nuclear inner membrane negative regulation of microtubule depolymerization cortical microtubule organization RNA export from nucleus protein stabilization cell cortex nuclear pore inner ring plasmodesma spindle microtubule Pwp2p-containing subcomplex of 90S preribosome myosin heavy chain kinase activity structural constituent of nuclear pore mitotic nuclear division cell growth snoRNA binding protein import into nucleus maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) translational elongation phragmoplast Butanoate metabolism translation elongation factor activity chromatin binding plasma membrane Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001627 | plasma membrane respiratory chain complex I mitochondrial electron transport, NADH to ubiquinone cellular response to nitrogen starvation intracellular distribution of mitochondria Transcription_related, Transcription regulator: DDT autophagy mitochondrial respiratory chain complex I Apelin signaling pathway aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation Transcription_related, Transcription regulator: SNF2 response to oxidative stress | details |
| TissueCFM001838 | formation of glycosidic bonds, GlycosylTransferases: GTnc 1,3-β-D-glucan biosynthesis (1->3)-beta-D-glucan biosynthetic process Ubiquitin_Proteasome_system, E2: UBC 1,3-beta-D-glucan synthase complex protein ubiquitination 1,3-beta-D-glucan synthase activity Protein processing in endoplasmic reticulum | details |
Expression profiles
 Show details about module gene expression profiling |