TissueCFM001520's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Purine metabolism | 0.004908502 | KEGG pathway |
| galactonolactone dehydrogenase activity | 0.005501577 | GO:0016633 |
| L-gulono-1,4-lactone dehydrogenase activity | 0.005501577 | GO:0080049 |
| delta24-sterol reductase activity | 0.005501577 | GO:0050614 |
| flavin adenine dinucleotide binding | 0.005501577 | GO:0050660 |
| 5'-nucleotidase activity | 0.010998766 | GO:0008253 |
| D-arabinono-1,4-lactone oxidase activity | 0.014659172 | GO:0003885 |
| ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | 0.015702079 | GO:0004748 |
| O-acyltransferase activity | 0.017853992 | GO:0008374 |
| Ascorbate and aldarate metabolism | 0.019413583 | KEGG pathway |
| Steroid biosynthesis | 0.019413583 | KEGG pathway |
| lignin metabolic process | 0.030084291 | GO:0009808 |
| plant-type secondary cell wall biogenesis | 0.032606678 | GO:0009834 |
| oxidation-reduction process | 0.032606678 | GO:0055114 |
| deoxyribonucleotide biosynthetic process | 0.032606678 | GO:0009263 |
| adenosine nucleotides degradation I | 0.033065674 | plantCyc |
| guanosine nucleotides degradation I | 0.033065674 | plantCyc |
| guanosine nucleotides degradation II | 0.033065674 | plantCyc |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.033065674 | plantCyc |
| plant sterol biosynthesis | 0.033065674 | plantCyc |
| pyrimidine salvage pathway | 0.033065674 | plantCyc |
| phosphatidylcholine acyl editing | 0.036725624 | plantCyc |
| phospholipases | 0.036725624 | plantCyc |
| brassinosteroid biosynthetic process | 0.038719644 | GO:0016132 |
| unidimensional cell growth | 0.038719644 | GO:0009826 |
| oxidoreductase activity, acting on CH-OH group of donors | 0.047446397 | GO:0016614 |
| DNA replication | 0.049149047 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002807 | AT4G33350 (7.00E-82) | AtTic22-IV|translocon at the inner envelope membrane of chloroplasts 22-IV |
| CRO_T003947 | AT1G01550 (5.00E-104) | BPS1|BYPASS 1 |
| CRO_T006828 | AT4G18750 (7.00E-87) | DOT4|DEFECTIVELY ORGANIZED TRIBUTARIES 4 |
| CRO_T012649 | AT4G19860 (3.00E-102) | alpha/beta-Hydrolases superfamily protein |
| CRO_T012682 | AT1G32300 (5.00E-09) | GulLO1|L -gulono-1,4-lactone ( L -GulL) oxidase 1 |
| CRO_T013353 | AT3G19820 (0) | CBB1|CABBAGE 1; DIM|DIMINUTIA; DIM1|DIMINUTO 1; DWF1|DWARF 1; EVE1|ENHANCED VERY-LOW-FLUENCE RESPONSES 1 |
| CRO_T016032 | AT2G21790 (1.00E-148) | ATRNR1|RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1; CLS8|CRINKLY LEAVES 8; DPD2|defective in pollen organelle DNA degradation 2; R1|RIBONUCLEOTIDE REDUCTASE 1 |
| CRO_T016411 | AT3G08790 (1.00E-102) | ENTH/VHS/GAT family protein |
| CRO_T029664 | AT2G38680 (1.00E-118) | 5'-nucleotidases; magnesium ion binding |
| CRO_T033281 | AT3G47590 (1.00E-88) | alpha/beta-Hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000281 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Transcription_related, Transcription factor: LOB response to glucose defense response to fungus cell surface receptor signaling pathway response to salt stress response to abscisic acid zinc ion binding | details |
| TissueCFM000366 | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity inosine-5'-phosphate biosynthesis II 'de novo' AMP biosynthetic process protein tetramerization Transcription_related, Transcription factor: LOB 'de novo' IMP biosynthetic process adenosine ribonucleotides de novo biosynthesis response to stress helicase activity unfolded protein binding | details |
| TissueCFM000685 | regulation of transcription from RNA polymerase II promoter in response to salt stress positive regulation of translational fidelity Ribosome deoxyribonucleotide biosynthetic process translation structural constituent of ribosome nucleic acid binding ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ATP-dependent helicase activity snoRNA binding ATP binding Pwp2p-containing subcomplex of 90S preribosome ribonucleoside-diphosphate reductase complex | details |
| TissueCFM000901 | aspartate carbamoyltransferase activity delta24-sterol reductase activity phenylalanine ammonia-lyase activity organic acid transmembrane transporter activity homoserine dehydrogenase activity L-homoserine biosynthesis phenylpropanoid biosynthesis, initial reactions UMP biosynthesis I trans-cinnamoyl-CoA biosynthesis organic acid transmembrane transport threonine biosynthetic process cinnamic acid biosynthetic process lignin metabolic process L-phenylalanine catabolic process pyrimidine ribonucleotide biosynthetic process urea cycle vacuole organization isoleucine biosynthetic process methionine biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process O-acyltransferase activity plant-type secondary cell wall biogenesis Lysosome Phenylalanine metabolism Pyrimidine metabolism Steroid biosynthesis cellular amino acid metabolic process | details |
| TissueCFM001016 | nucleobase-containing compound biosynthetic process Pyrimidine metabolism Viral carcinogenesis farnesylcysteine salvage pathway pyrimidine deoxyribonucleosides salvage phosphate-containing compound metabolic process nucleosome assembly geraniol and geranial biosynthesis detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis phosphatidylcholine acyl editing phospholipases very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II response to water deprivation | details |
| TissueCFM001122 | ornithine biosynthetic process glutamate N-acetyltransferase activity acetyl-CoA:L-glutamate N-acetyltransferase activity L-ornithine biosynthesis I L-arginine biosynthesis II (acetyl cycle) arginine biosynthetic process 2-Oxocarboxylic acid metabolism chloroplast stroma phosphatidylcholine acyl editing phospholipases mitochondrial large ribosomal subunit O-acyltransferase activity Transcription_related, Transcription factor: bZIP thylakoid response to cytokinin | details |
| TissueCFM001160 | Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family delta24-sterol reductase activity Transcription_related, Transcription factor: bZIP phosphatidylcholine acyl editing phospholipases plant sterol biosynthesis lignin metabolic process Steroid biosynthesis 5S rRNA binding O-acyltransferase activity meristem structural organization plant-type secondary cell wall biogenesis unidimensional cell growth brassinosteroid biosynthetic process protein autophosphorylation lipid metabolic process | details |
| TissueCFM001248 | Viral carcinogenesis nucleosome assembly response to water deprivation nucleosome thylakoid lipoate biosynthesis and incorporation I protein heterodimerization activity chloroplast vacuolar membrane nucleolus Golgi apparatus Lipoic acid metabolism lipoyl(octanoyl) transferase activity plasmodesma lipoate biosynthetic process protein lipoylation octanoyltransferase activity Glycolysis / Gluconeogenesis DNA binding cytosol isomerase activity plasma membrane carbohydrate binding | details |
| TissueCFM001249 | calcium-dependent ATPase activity galactonolactone dehydrogenase activity L-gulono-1,4-lactone dehydrogenase activity L-ascorbate biosynthesis I (L-galactose pathway) barrier septum site selection Ascorbate and aldarate metabolism Viral carcinogenesis D-arabinono-1,4-lactone oxidase activity chloroplast fission chloroplast envelope nucleosome assembly response to water deprivation phosphoprotein phosphatase activity protein homodimerization activity protein heterodimerization activity | details |
| TissueCFM001272 | O-acyltransferase activity vacuolar transport vacuole organization phosphatidylcholine acyl editing phospholipases formation of glycosidic bonds, GlycosylTransferases: GTnc membrane coat Lysosome vesicle-mediated transport lipid metabolic process intracellular protein transport Endocytosis | details |
| TissueCFM001273 | phenylpyruvate tautomerase activity pyrroline-5-carboxylate reductase activity L-arginine degradation VI (arginase 2 pathway) L-proline biosynthesis I L-proline biosynthesis III L-proline biosynthetic process vacuole organization Transcription_related, Transcription regulator: TRAF Insulin signaling pathway Tyrosine metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: BTB Lysosome membrane coat exocyst exocytosis | details |
| TissueCFM001363 | Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase polyamine transmembrane transport L-amino acid transmembrane transporter activity polyamine transmembrane transporter activity Plant-pathogen interaction amino acid transmembrane transport | details |
| TissueCFM001376 | Transcriptional misregulation in cancers phosphatidylcholine acyl editing phospholipases O-acyltransferase activity lipid metabolic process protein heterodimerization activity chromosome nucleosome | details |
| TissueCFM001387 | Cytochrome_P450, Cytochrome P450: CYP89A vernolate biosynthesis I L-gulono-1,4-lactone dehydrogenase activity galactonolactone dehydrogenase activity poly-hydroxy fatty acids biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) D-arabinono-1,4-lactone oxidase activity Ascorbate and aldarate metabolism Transcription_related, Transcription factor: bZIP Plant hormone signal transduction | details |
| TissueCFM001481 | regulation of double-strand break repair via homologous recombination phosphatidylcholine acyl editing phospholipases cytoplasmic microtubule organization O-acyltransferase activity microtubule-severing ATPase activity single-organism process unfolded protein binding Ubiquitin_Proteasome_system, E3 adaptor: DWD lipid metabolic process protein folding | details |
| TissueCFM001556 | galactonolactone dehydrogenase activity L-gulono-1,4-lactone dehydrogenase activity D-arabinono-1,4-lactone oxidase activity O-acyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc L-ascorbate biosynthesis I (L-galactose pathway) phosphatidylcholine acyl editing phospholipases vacuolar transport vacuole organization Ascorbate and aldarate metabolism Lysosome membrane coat Endocytosis flavin adenine dinucleotide binding vesicle-mediated transport lipid metabolic process | details |
| TissueCFM001646 | proteasome-mediated ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING zinc ion binding delta24-sterol reductase activity protein ubiquitination integral component of membrane lignin metabolic process 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis plant sterol biosynthesis Steroid biosynthesis plant-type secondary cell wall biogenesis plasma membrane unidimensional cell growth protein polyubiquitination brassinosteroid biosynthetic process Peroxisome protein ubiquitination involved in ubiquitin-dependent protein catabolic process vacuolar membrane oxidoreductase activity, acting on CH-OH group of donors | details |
Expression profiles
 Show details about module gene expression profiling |