TissueCFM001736's detailed annotation
Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
protein tyrosine phosphatase activity0.000255442GO:0004725
RNA polymerase II transcription corepressor activity0.004122638GO:0001106
histone deacetylase activity0.004122638GO:0004407
GTP-dependent protein binding0.004122638GO:0030742
myosin XI tail binding0.004122638GO:0080115
histone deacetylase complex0.005266852GO:0000118
trans-Golgi network membrane0.005266852GO:0032588
Legionellosis 0.005684669KEGG pathway
Mitophagy - yeast 0.005684669KEGG pathway
histone deacetylation0.005995962GO:0016575
negative regulation of transcription from RNA polymerase II promoter0.005995962GO:0000122
mitochondrial RNA metabolic process0.005995962GO:0000959
nucleus0.008399574GO:0005634
chromatin0.013157793GO:0000785
Transcription_related, Transcription factor: Orphans0.013910053TF family
Ubiquitin_Proteasome_system, E2: UBC0.013910053ubs family
RNA modification0.01706578GO:0009451
peptidyl-tyrosine dephosphorylation0.01706578GO:0035335
poly(A) RNA binding0.027433132GO:0044822
RNA degradation 0.027885732KEGG pathway
ER to Golgi vesicle-mediated transport0.029139757GO:0006888
RNA processing0.035173968GO:0006396
small GTPase mediated signal transduction0.037452404GO:0007264
cytoplasm0.041602705GO:0005737

Module member annotation

Gene IDOrtholog in Arabidopsis (Blast E-value)Annotation in Arabidopsis
CRO_T009624AT3G62010 (1.00E-41)unknown protein
CRO_T011236AT1G10250 (1.00E-18)
CRO_T015859AT3G62010 (3.00E-13)unknown protein
CRO_T022628AT1G48650 (0)DEA(D/H)-box RNA helicase family protein
CRO_T023886AT2G46030 (1.00E-22)UBC6|ubiquitin-conjugating enzyme 6
CRO_T032610AT3G11730 (3.00E-92)ATRABD1|RAB GTPASE HOMOLOG D1
CRO_T032758AT4G33990 (2.00E-121)EMB2758|embryo defective 2758

Direct connection functional modules

Module IDFunction AnnotationOverlap condition
TissueCFM001181Legionellosis
trans-Golgi network membrane
myosin XI tail binding
GTP-dependent protein binding
Circadian rhythm - plant
response to photooxidative stress
red or far-red light signaling pathway
chlorophyll catabolic process
Circadian rhythm
Transcription_related, Transcription factor: Orphans
Transcription_related, Transcription regulator: PHD
Ubiquitin_Proteasome_system, E2: UBC
negative regulation of transcription, DNA-templated
plastoglobule
plasma membrane
ER to Golgi vesicle-mediated transport
phosphorelay signal transduction system
small GTPase mediated signal transduction
details
TissueCFM001667response to stimulus
protein tyrosine phosphatase activity
electron carrier activity
details
TissueCFM001711Ubiquitin_Proteasome_system, E3 adaptor: F-box
vesicle-mediated transport
intracellular protein transport
membrane fusion
reproductive structure development
single organism reproductive process
post-embryonic development
Basal transcription factors
SNAP receptor activity
protein tyrosine phosphatase activity
details
TissueCFM001830Legionellosis
Ubiquitin_Proteasome_system, E3 adaptor: DDB1
Transcription_related, Transcription regulator: Jumonji
1-aminocyclopropane-1-carboxylate deaminase activity
myosin XI tail binding
D-cysteine desulfhydrase activity
GTP-dependent protein binding
response to brassinosteroid
histone H3-K9 demethylation
D-cysteine catabolic process
negative regulation of histone acetylation
trans-Golgi network membrane
ethylene biosynthetic process
calcium-dependent cysteine-type endopeptidase activity
cobalt ion binding
leaf development
vegetative to reproductive phase transition of meristem
unidimensional cell growth
mRNA surveillance pathway
ER to Golgi vesicle-mediated transport
small GTPase mediated signal transduction
details

Expression profiles


Show details about module gene expression profiling
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