TissueCFM001762's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ER-associated ubiquitin-dependent protein catabolic process | 0.000108107 | GO:0030433 |
| retrograde protein transport, ER to cytosol | 0.003855401 | GO:0030970 |
| glucose catabolic process | 0.006424245 | GO:0006007 |
| positive regulation of proteasomal protein catabolic process | 0.007706246 | GO:1901800 |
| positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 0.007706246 | GO:0045899 |
| nuclear proteasome complex | 0.008683451 | GO:0031595 |
| cytosolic proteasome complex | 0.008683451 | GO:0031597 |
| endoplasmic reticulum lumen | 0.008683451 | GO:0005788 |
| phosphoglycerate mutase activity | 0.009027955 | GO:0004619 |
| folic acid binding | 0.009027955 | GO:0005542 |
| proteasome regulatory particle, base subcomplex | 0.009765273 | GO:0008540 |
| proteasome-activating ATPase activity | 0.014660674 | GO:0036402 |
| TBP-class protein binding | 0.014660674 | GO:0017025 |
| gluconeogenesis I | 0.019505234 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.019505234 | plantCyc |
| glycolysis IV (plant cytosol) | 0.019505234 | plantCyc |
| Rubisco shunt | 0.019505234 | plantCyc |
| glycolytic process | 0.023713572 | GO:0006096 |
| manganese ion binding | 0.024334089 | GO:0030145 |
| response to salt stress | 0.024706105 | GO:0009651 |
| helicase activity | 0.039729375 | GO:0004386 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008682 | AT4G19645 (3.00E-108) | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein |
| CRO_T014528 | AT1G55150 (0) | RH20|RNA helicase 20 |
| CRO_T015410 | AT2G20140 (0) | RPT2b|regulatory particle AAA-ATPase 2b |
| CRO_T024377 | AT2G20830 (2.00E-76) | transferases; folic acid binding |
| CRO_T028033 | AT1G09780 (0) | iPGAM1|2,3-biphosphoglycerate-independent phosphoglycerate mutase 1 |
| CRO_T030246 | AT5G35080 (4.00E-97) | OS9|OS9 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000615 | Carbon metabolism L-serine biosynthetic process L-serine biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolytic process Phenylpropanoid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc L-tryptophan degradation VI (via tryptamine) Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase pyridoxal phosphate binding adenosylhomocysteinase activity glucose-6-phosphate isomerase activity phosphoglycerate dehydrogenase activity aromatic-L-amino-acid decarboxylase activity phosphopyruvate hydratase activity O-phospho-L-serine:2-oxoglutarate aminotransferase activity phosphatidate cytidylyltransferase activity vomilenine glucosyltransferase activity tryptophan synthase activity raucaffricine beta-glucosidase activity S-adenosyl-L-methionine cycle II CDP-diacylglycerol biosynthesis II L-methionine degradation I (to L-homocysteine) strictosidine beta-glucosidase activity S-adenosylmethionine cycle starch metabolic process phosphatidylglycerol biosynthetic process glucosinolate catabolic process CDP-diacylglycerol biosynthetic process | details |
| TissueCFM000841 | Carbon metabolism folic acid binding O-phospho-L-serine:2-oxoglutarate aminotransferase activity L-serine biosynthesis tryptophan synthase activity tryptophan biosynthetic process L-serine biosynthetic process magnesium ion transmembrane transport magnesium ion transport RNA modification cellular amino acid biosynthetic process tRNA modification potassium ion binding pyruvate kinase activity magnesium ion transmembrane transporter activity glycolytic process glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) L-tryptophan biosynthesis Rubisco shunt Biosynthesis of amino acids | details |
| TissueCFM000845 | glycolytic process glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) Rubisco shunt Carbon metabolism pyruvate kinase activity magnesium ion binding potassium ion binding gluconeogenesis I phosphopyruvate hydratase activity Transcription_related, Transcription factor: G2-like kinase activity fructose-bisphosphate aldolase activity phosphopyruvate hydratase complex tRNA modification trichome morphogenesis response to cytokinin Calvin-Benson-Bassham cycle sucrose biosynthesis I (from photosynthesis) | details |
| TissueCFM001394 | Proteasome proteasome regulatory particle, base subcomplex Transcription_related, Transcription factor: Trihelix oxidation-reduction process regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction detection of calcium ion snRNA transcription calcium-mediated signaling proteasome assembly regulation of photomorphogenesis positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity Rab GDP-dissociation inhibitor activity polyubiquitin binding maturation of LSU-rRNA glucose metabolic process L-ascorbate peroxidase activity nuclear proteasome complex cytosolic proteasome complex ER-associated ubiquitin-dependent protein catabolic process ascorbate glutathione cycle L-ascorbate degradation V | details |
| TissueCFM001529 | ER-associated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3: RING threonyl-tRNA aminoacylation retrograde protein transport, ER to cytosol positive regulation of RNA polymerase II transcriptional preinitiation complex assembly cullin deneddylation positive regulation of proteasomal protein catabolic process threonine-tRNA ligase activity endoplasmic reticulum lumen nuclear proteasome complex cytosolic proteasome complex proteasome regulatory particle, base subcomplex proteasome complex TBP-class protein binding proteasome-activating ATPase activity response to salt stress zinc ion binding Aminoacyl-tRNA biosynthesis Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TissueCFM001560 | S-adenosyl-L-methionine cycle II L-methionine degradation I (to L-homocysteine) Spliceosome S-adenosylmethionine cycle adenosylhomocysteinase activity positive regulation of proteasomal protein catabolic process spliceosomal complex assembly one-carbon metabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly ER-associated ubiquitin-dependent protein catabolic process post-mRNA release spliceosomal complex nuclear proteasome complex Prp19 complex prespliceosome cytosolic proteasome complex catalytic step 1 spliceosome proteasome regulatory particle, base subcomplex Cysteine and methionine metabolism Proteasome precatalytic spliceosome TBP-class protein binding proteasome-activating ATPase activity catalytic step 2 spliceosome isomerase activity amino acid binding | details |
| TissueCFM001574 | S-adenosylmethionine cycle nuclear proteasome complex proteasome regulatory particle, base subcomplex cytosolic proteasome complex adenosylhomocysteinase activity S-adenosyl-L-methionine cycle II L-methionine degradation I (to L-homocysteine) positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process one-carbon metabolic process ER-associated ubiquitin-dependent protein catabolic process TCA cycle II (plants and fungi) TBP-class protein binding proteasome-activating ATPase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) Cysteine and methionine metabolism Proteasome protein dephosphorylation protein serine/threonine phosphatase activity | details |
| TissueCFM001696 | Carbon metabolism phosphopyruvate hydratase activity O-phospho-L-serine:2-oxoglutarate aminotransferase activity phosphopyruvate hydratase complex tryptophan synthase activity L-serine biosynthetic process tRNA modification trichome morphogenesis glycolytic process tryptophan biosynthetic process cellular amino acid biosynthetic process response to cytokinin L-serine biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) L-tryptophan biosynthesis Rubisco shunt Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |