TreatCFM000295's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
Function Annotation | FDR | Gene Ontolog |
---|---|---|
nuclear-transcribed mRNA catabolic process | 0.002955301 | GO:0000956 |
large ribosomal subunit rRNA binding | 0.010720611 | GO:0070180 |
cytoplasmic translation | 0.013764936 | GO:0002181 |
ribosomal large subunit assembly | 0.013764936 | GO:0000027 |
rRNA processing | 0.015102337 | GO:0006364 |
Transcription_related, Transcription factor: C2C2-Dof | 0.0194503 | TF family |
Transcription_related, Transcription factor: MYB-related | 0.0194503 | TF family |
preribosome, large subunit precursor | 0.024339834 | GO:0030687 |
Transcription_related, Transcription factor: C2H2 | 0.025214511 | TF family |
cytosolic large ribosomal subunit | 0.038032504 | GO:0022625 |
nucleolus | 0.038032504 | GO:0005730 |
Module member annotation
Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
---|---|---|
CRO_T003111 | AT1G61215 (1.00E-85) | BRD4|bromodomain 4 |
CRO_T009019 | AT1G25260 (3.00E-92) | Ribosomal protein L10 family protein |
CRO_T011192 | AT3G46080 (2.00E-13) | C2H2-type zinc finger family protein |
CRO_T012045 | AT1G19900 (6.00E-16) | glyoxal oxidase-related protein |
CRO_T016708 | AT3G47500 (8.00E-77) | CDF3|cycling DOF factor 3 |
CRO_T032621 | AT1G03170 (8.00E-16) | FAF2|FANTASTIC FOUR 2; FTM5|FLORAL TRANSITION AT THE MERISTEM5 |
Direct connection functional modules
Module ID | Function Annotation | Overlap condition |
---|---|---|
TreatCFM001135 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: MYB-related xyloglucan metabolic process cell wall biogenesis Plant hormone signal transduction xyloglucan:xyloglucosyl transferase activity hydrolase activity, hydrolyzing O-glycosyl compounds carbohydrate binding defense response | details |
TreatCFM001439 | Alanine, aspartate and glutamate metabolism nuclear-transcribed mRNA catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycerolipid metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds large ribosomal subunit rRNA binding nitrogen compound metabolic process glycosyl compound metabolic process ribosomal large subunit assembly cytoplasmic translation rRNA processing beta-glucosidase activity | details |
TreatCFM001440 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glycosyl compound metabolic process Glycerolipid metabolism beta-glucosidase activity nuclear-transcribed mRNA catabolic process Alanine, aspartate and glutamate metabolism carbohydrate metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds large ribosomal subunit rRNA binding cytoplasmic translation nitrogen compound metabolic process ribosomal large subunit assembly rRNA processing transferase activity, transferring acyl groups | details |
TreatCFM001613 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family ErbB signaling pathway trans, trans-farnesyl diphosphate biosynthesis methylerythritol phosphate pathway I methylerythritol phosphate pathway II mevalonate pathway I cytosol nuclear-transcribed mRNA catabolic process peptidyl-diphthamide biosynthetic process from peptidyl-histidine positive regulation of ubiquitin-protein transferase activity regulation of mitotic cell cycle ubiquitin-like protein binding cullin family protein binding diphthine synthase activity SUMO activating enzyme activity protein neddylation histone acetyltransferase activity ubiquitin conjugating enzyme binding large ribosomal subunit rRNA binding lipase activity protein sumoylation Ubiquitin mediated proteolysis histone acetylation ribosomal large subunit assembly cytoplasmic translation | details |
TreatCFM001614 | ncRNA metabolic process nuclear-transcribed mRNA catabolic process mRNA catabolic process rRNA modification large ribosomal subunit rRNA binding lipase activity snoRNA binding nuclease activity Ribosome biogenesis in eukaryotes ribosomal large subunit assembly cytoplasmic translation box C/D snoRNP complex macromolecular complex rRNA processing lipid metabolic process preribosome, large subunit precursor | details |
TreatCFM001719 | Phenylalanine metabolism 4-hydroxybenzoate biosynthesis I (eukaryotes) umbelliferone biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: MYB-related Flavonoid biosynthesis jasmonic acid biosynthesis xyloglucan metabolic process water transport glycerol transport cellular water homeostasis cell wall biogenesis ion transmembrane transport xyloglucan:xyloglucosyl transferase activity water channel activity glycerol channel activity Phenylpropanoid biosynthesis carbohydrate binding ligase activity hydrolase activity, hydrolyzing O-glycosyl compounds | details |
TreatCFM002030 | nuclear-transcribed mRNA catabolic process large ribosomal subunit rRNA binding acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis ribosomal large subunit assembly cytoplasmic translation rRNA processing preribosome, large subunit precursor Phenylpropanoid biosynthesis cytosolic large ribosomal subunit nucleolus Spliceosome Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: MYB | details |
Expression profiles
![]() Show details about module gene expression profiling |