TreatCFM000295's detailed annotation
Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nuclear-transcribed mRNA catabolic process0.002955301GO:0000956
large ribosomal subunit rRNA binding0.010720611GO:0070180
cytoplasmic translation0.013764936GO:0002181
ribosomal large subunit assembly0.013764936GO:0000027
rRNA processing0.015102337GO:0006364
Transcription_related, Transcription factor: C2C2-Dof0.0194503TF family
Transcription_related, Transcription factor: MYB-related0.0194503TF family
preribosome, large subunit precursor0.024339834GO:0030687
Transcription_related, Transcription factor: C2H20.025214511TF family
cytosolic large ribosomal subunit0.038032504GO:0022625
nucleolus0.038032504GO:0005730

Module member annotation

Gene IDOrtholog in Arabidopsis (Blast E-value)Annotation in Arabidopsis
CRO_T003111AT1G61215 (1.00E-85)BRD4|bromodomain 4
CRO_T009019AT1G25260 (3.00E-92)Ribosomal protein L10 family protein
CRO_T011192AT3G46080 (2.00E-13)C2H2-type zinc finger family protein
CRO_T012045AT1G19900 (6.00E-16)glyoxal oxidase-related protein
CRO_T016708AT3G47500 (8.00E-77)CDF3|cycling DOF factor 3
CRO_T032621AT1G03170 (8.00E-16)FAF2|FANTASTIC FOUR 2; FTM5|FLORAL TRANSITION AT THE MERISTEM5

Direct connection functional modules

Module IDFunction AnnotationOverlap condition
TreatCFM001135hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc
Transcription_related, Transcription factor: MYB-related
xyloglucan metabolic process
cell wall biogenesis
Plant hormone signal transduction
xyloglucan:xyloglucosyl transferase activity
hydrolase activity, hydrolyzing O-glycosyl compounds
carbohydrate binding
defense response
details
TreatCFM001439Alanine, aspartate and glutamate metabolism
nuclear-transcribed mRNA catabolic process
formation of glycosidic bonds, GlycosylTransferases: GTnc
hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc
Glycerolipid metabolism
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
large ribosomal subunit rRNA binding
nitrogen compound metabolic process
glycosyl compound metabolic process
ribosomal large subunit assembly
cytoplasmic translation
rRNA processing
beta-glucosidase activity
details
TreatCFM001440hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc
glycosyl compound metabolic process
Glycerolipid metabolism
beta-glucosidase activity
nuclear-transcribed mRNA catabolic process
Alanine, aspartate and glutamate metabolism
carbohydrate metabolic process
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
large ribosomal subunit rRNA binding
cytoplasmic translation
nitrogen compound metabolic process
ribosomal large subunit assembly
rRNA processing
transferase activity, transferring acyl groups
details
TreatCFM001613hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc
Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family
ErbB signaling pathway
trans, trans-farnesyl diphosphate biosynthesis
methylerythritol phosphate pathway I
methylerythritol phosphate pathway II
mevalonate pathway I
cytosol
nuclear-transcribed mRNA catabolic process
peptidyl-diphthamide biosynthetic process from peptidyl-histidine
positive regulation of ubiquitin-protein transferase activity
regulation of mitotic cell cycle
ubiquitin-like protein binding
cullin family protein binding
diphthine synthase activity
SUMO activating enzyme activity
protein neddylation
histone acetyltransferase activity
ubiquitin conjugating enzyme binding
large ribosomal subunit rRNA binding
lipase activity
protein sumoylation
Ubiquitin mediated proteolysis
histone acetylation
ribosomal large subunit assembly
cytoplasmic translation
details
TreatCFM001614ncRNA metabolic process
nuclear-transcribed mRNA catabolic process
mRNA catabolic process
rRNA modification
large ribosomal subunit rRNA binding
lipase activity
snoRNA binding
nuclease activity
Ribosome biogenesis in eukaryotes
ribosomal large subunit assembly
cytoplasmic translation
box C/D snoRNP complex
macromolecular complex
rRNA processing
lipid metabolic process
preribosome, large subunit precursor
details
TreatCFM001719Phenylalanine metabolism
4-hydroxybenzoate biosynthesis I (eukaryotes)
umbelliferone biosynthesis
hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc
Transcription_related, Transcription factor: MYB-related
Flavonoid biosynthesis
jasmonic acid biosynthesis
xyloglucan metabolic process
water transport
glycerol transport
cellular water homeostasis
cell wall biogenesis
ion transmembrane transport
xyloglucan:xyloglucosyl transferase activity
water channel activity
glycerol channel activity
Phenylpropanoid biosynthesis
carbohydrate binding
ligase activity
hydrolase activity, hydrolyzing O-glycosyl compounds
details
TreatCFM002030nuclear-transcribed mRNA catabolic process
large ribosomal subunit rRNA binding
acetaldehyde biosynthesis I
detoxification of reactive carbonyls in chloroplasts
farnesylcysteine salvage pathway
geraniol and geranial biosynthesis
mannitol degradation II
pyruvate fermentation to ethanol II
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
ribosomal large subunit assembly
cytoplasmic translation
rRNA processing
preribosome, large subunit precursor
Phenylpropanoid biosynthesis
cytosolic large ribosomal subunit
nucleolus
Spliceosome
Transcription_related, Transcription factor: ERF
Transcription_related, Transcription factor: MYB
details

Expression profiles


Show details about module gene expression profiling
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