TreatCFM000524's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| trans, trans-farnesyl diphosphate biosynthesis | 0.007087818 | plantCyc |
| geranylgeranyl diphosphate biosynthesis | 0.007087818 | plantCyc |
| polyisoprenoid biosynthesis | 0.007087818 | plantCyc |
| superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) | 0.007087818 | plantCyc |
| superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) | 0.007087818 | plantCyc |
| xylan biosynthesis | 0.007087818 | plantCyc |
| Terpenoid backbone biosynthesis | 0.010709246 | KEGG pathway |
| Z-farnesyl diphosphate synthase activity | 0.012117839 | GO:0033850 |
| farnesyl diphosphate biosynthetic process | 0.015015511 | GO:0045337 |
| geranyltranstransferase activity | 0.01514327 | GO:0004337 |
| dimethylallyltranstransferase activity | 0.020182077 | GO:0004161 |
| recognition of pollen | 0.035614443 | GO:0048544 |
| cellulose synthase (UDP-forming) activity | 0.042314784 | GO:0016760 |
| cellulose biosynthetic process | 0.048649227 | GO:0030244 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010939 | AT2G04280 (0) | unknown protein |
| CRO_T011822 | AT5G53720 (1.00E-19) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T013246 | AT4G32300 (8.00E-110) | SD2-5|S-domain-2 5 |
| CRO_T015226 | AT2G43820 (3.00E-126) | ATSAGT1|salicylic acid glucosyltransferase 1; SGT1|UDP-glucose:salicylic acid glucosyltransferase 1; UGT74F2|UDP-glucosyltransferase 74F2 |
| CRO_T015546 | AT5G47770 (3.00E-144) | FPS1|farnesyl diphosphate synthase 1 |
| CRO_T021294 | AT1G02730 (0) | ATCSLD5|cellulose synthase-like D5; CSLD5|CELLULOSE SYNTHASE LIKE D5; SOS6|SALT OVERLY SENSITIVE 6 |
| CRO_T028125 | AT5G02430 (0) | Transducin/WD40 repeat-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001027 | xylan biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulose synthase (UDP-forming) activity cellulase activity Protein export cellular component organization cellulose catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc cellulose biosynthetic process | details |
| TreatCFM001052 | xylan biosynthesis malate transport polysaccharide catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulose biosynthetic process Starch and sucrose metabolism plant-type vacuole membrane malate transmembrane transporter activity cellulose synthase (UDP-forming) activity cell wall organization | details |
Expression profiles
 Show details about module gene expression profiling |